add tests

test/commands/unipept/test_pept2prot.rb

@@ -16,6 +16,22 @@ def test_required_fields
       assert_equal(['peptide'], pept2prot.required_fields)
     end
 
+    def test_meganize_options
+      command = Cri::Command.define { name 'pept2prot' }
+      pept2prot = Commands::Pept2prot.new({ meganize: true, host: 'http://api.unipept.ugent.be' }, [], command)
+      assert(pept2prot.options[:all])
+      assert_equal(['peptide,refseq_protein_ids'], pept2prot.options[:select])
+      assert_equal('blast', pept2prot.options[:format])
+    end
+
+    def test_meganize_options_overridecommand
+      command = Cri::Command.define { name 'pept2prot' }
+      pept2prot = Commands::Pept2prot.new({ meganize: true, format: 'xml', all: false, select: ['something'], host: 'http://api.unipept.ugent.be' }, [], command)
+      assert(pept2prot.options[:all])
+      assert_equal(['peptide,refseq_protein_ids'], pept2prot.options[:select])
+      assert_equal('blast', pept2prot.options[:format])
+    end
+
     def test_help
       out, _err = capture_io_while do
         assert_raises SystemExit do

test/test_formatters.rb

@@ -7,6 +7,7 @@ def test_available_formatters
       assert(formatters.include?('json'))
       assert(formatters.include?('csv'))
       assert(formatters.include?('xml'))
+      assert(formatters.include?('blast'))
     end
 
     def test_default_formatter
@@ -29,6 +30,9 @@ def test_new_for_format
       formatter = Formatter.new_for_format('csv')
       assert_equal('csv', formatter.type)
 
+      formatter = Formatter.new_for_format('blast')
+      assert_equal('blast', formatter.type)
+
       formatter = Formatter.new_for_format('blah')
       assert_equal('csv', formatter.type)
     end
@@ -121,6 +125,31 @@ def test_format_with_fasta
     end
   end
 
+  class BlastFormatterTestCase < Unipept::TestCase
+    def formatter
+      Formatter.new_for_format('blast')
+    end
+
+    def test_header
+      assert_equal('', formatter.header(nil, nil))
+    end
+
+    def test_footer
+      assert_equal('', formatter.footer)
+    end
+
+    def test_type
+      assert_equal('blast', formatter.type)
+    end
+
+    def test_convert
+      object = [{ 'peptide' => 'MDGTEYIIVK', 'refseq_protein_ids' => 'WP_008705701.1' }, { 'peptide' => 'ISVAQGASK', 'refseq_protein_ids' => 'NP_003881.2 XP_011547112.1 XP_011547113.1' }, { 'peptide' => 'ISVAQGASK', 'refseq_protein_ids' => '' }]
+      output = "MDGTEYIIVK\tref|WP_008705701.1|\t100\t10\t0\t0\t0\t10\t0\t10\t1e-100\t100\nISVAQGASK\tref|NP_003881.2 XP_011547112.1 XP_011547113.1|\t100\t10\t0\t0\t0\t10\t0\t10\t1e-100\t100\n"
+      assert_equal(output, formatter.convert(object, true))
+      assert_equal(output, formatter.convert(object, false))
+    end
+  end
+
   class CSVFormatterTestCase < Unipept::TestCase
     def formatter
       Formatter.new_for_format('csv')