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enzymes.json
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enzymes.json
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{
"description": "Enzyme catalysed reactions",
"id":"Enzyme",
"components":{
"R_MM":{
"description": "Michaelis-Menten reaction",
"class": "Component",
"metamodel":"R",
"ports":{
"0":{"description":"Substrate"},
"1":{"description":"Product"}
},
"params":{
"r1":{"description":"Rate of reaction 1"},
"r2":{"description":"Rate of reaction 2"},
"k_c":{"description":"Affinity of complex relative to free enzyme"},
"e_T":{"description":"Total amount of enzyme"},
"R":{"description":"Universal Gas Constant"},
"T":{"description": "Temperature"}
},
"constitutive_relations":[
"f_0 + f_1",
"f_0 - e_T*r1*r2*k_c*(exp(e_0/R/T) - exp(e_1/R/T)) / (r1*exp(e_0/R/T) + r2*exp(e_1/R/T) + k_c*(r1+r2))"
]
}
}
}