This is a reference environment for the manuscript "A thermodynamic framework for modelling membrane transporters". Running the code in this environment will reproduce the figures in the manuscript.
In order to use the reference enviroment, VirtualBox, Vagrant and Git need to be installed.
To use the reference environment, type the following in the command line:
$ git clone https://github.com/uomsystemsbiology/transporter_thermodynamics_reference_environment.git
$ cd transporter_thermodynamics_reference_environment
$ vagrant up
$ vagrant reload
For further information, please refer to the documentation at http://uomsystemsbiology.github.io/research/reference-environments/.