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UpSet.js Jupyter Widget

NPM Package Github Actions Open in NBViewer Open in Binder Open API Docs Open Example

A Jupyter Widget Library around UpSet.js.

This package is part of the UpSet.js ecosystem located at the main Github Monorepo.

Installation

You can install using pip:

# some ipywidget 8.x.x alpha vesion
pip install ipywidgets upsetjs_jupyter_widget
# for notebooks
jupyter nbextension enable --sys-prefix --py upsetjs_jupyter_widget
# for lab
jupyter labextension install @jupyter-widgets/jupyterlab-manager upsetjs_jupyter_widget

Usage

from ipywidgets import interact
from upsetjs_jupyter_widget import UpSetJSWidget
import pandas as pd
w = UpSetJSWidget[str]()
w.from_dict(dict(one = ['a', 'b', 'c', 'e', 'g', 'h', 'k', 'l', 'm'], two = ['a', 'b', 'd', 'e', 'j'], three = ['a', 'e', 'f', 'g', 'h', 'i', 'j', 'l', 'm']))
w

upset_from_dict

df = pd.DataFrame(dict(
    one=[1, 1, 1, 0, 1, 0, 1, 1, 0, 0, 1, 1, 1],
    two=[1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0],
    three=[1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 1]
), index=['a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i', 'j', 'k', 'l', 'm'])
w.from_dataframe(df)
w

upset_from_dataframe

it support the ipywidget interact method to get notified about the user input

def selection_changed(s):
    return s.name if s else None
interact(selection_changed, s=w)

see also introduction.ipynb

see also Open in NBViewer Open in Binder

Documentation

the package documentation is located at Open API Docs. An introduction Jupyter Notebooks is at Open Example.

Venn Diagram

Besides the main UpSet.js plot also Venn Diagrams for up to five sets are supported. It uses the same input formats and has similar functionality in terms of interaction.

from upsetjs_jupyter_widget import UpSetJSVennDiagramWidget
v = UpSetJSVennDiagramWidget[str]()
v.from_dict(dict(one = ['a', 'b', 'c', 'e', 'g', 'h', 'k', 'l', 'm'], two = ['a', 'b', 'd', 'e', 'j'], three = ['a', 'e', 'f', 'g', 'h', 'i', 'j', 'l', 'm']))
v

image

see also venn.ipynb

Karnaugh Map

Besides the main UpSet.js plot also a variant of a Karnaugh Map. It uses the same input formats and has similar functionality in terms of interaction.

from upsetjs_jupyter_widget import UpSetJSKarnaughMapWidget
v = UpSetJSKarnaughMapWidget[str]()
v.from_dict(dict(one = ['a', 'b', 'c', 'e', 'g', 'h', 'k', 'l', 'm'], two = ['a', 'b', 'd', 'e', 'j'], three = ['a', 'e', 'f', 'g', 'h', 'i', 'j', 'l', 'm']))
v

image

see also kmap.ipynb

Dev Environment

npm i -g yarn
yarn set version berry
yarn
yarn pnpify --sdk vscode
conda create -f environment.yml
conda activate upsetjs_jupyter_widget
pip install -e .
jupyter nbextension install --sys-prefix --overwrite --py upsetjs_jupyter_widget
jupyter nbextension enable --sys-prefix --py upsetjs_jupyter_widget
jupyter labextension install @jupyter-widgets/jupyterlab-manager .

Commands

yarn test
yarn lint
yarn build  !! within the pipenv

Privacy Policy

UpSet.js is a client only library. The library or any of its integrations doesn't track you or transfers your data to any server. The uploaded data in the app are stored in your browser only using IndexedDB. The Tableau extension can run in a sandbox environment prohibiting any server requests. However, as soon as you export your session within the app to an external service (e.g., Codepen.io) your data will be transferred.

License / Terms of Service

Commercial license

If you want to use Upset.js for a commercial application the commercial license is the appropriate license. Contact @sgratzl for details.

Open-source license

This library is released under the GNU AGPLv3 version to be used for private and academic purposes. In case of a commercial use, please get in touch regarding a commercial license.