update

urmi-21 · Jan 10, 2021 · 248b6cf · 248b6cf
1 parent 5545646
commit 248b6cf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pyrpipe/valid_args.py b/pyrpipe/valid_args.py
@@ -46,7 +46,7 @@
             '--genomeDir','--genomeLoad','--genomeFastaFiles','--genomeChrBinNbits','--genomeSAindexNbases','--genomeSAsparseD','--genomeSuffixLengthMax','--genomeChainFiles','--genomeFileSizes',
             '--sjdbFileChrStartEnd','--sjdbGTFfile','--sjdbGTFchrPrefix','--sjdbGTFfeatureExon','--sjdbGTFtagExonParentTranscript','--sjdbGTFtagExonParentGene','--sjdbOverhang','--sjdbScore','--sjdbInsertSave',
             '--inputBAMfile','--readFilesIn','--readFilesCommand','--readMapNumber','--readMatesLengthsIn','--readNameSeparator','--clip3pNbases','--clip5pNbases','--clip3pAdapterSeq','--clip3pAdapterMMp','--clip3pAfterAdapterNbases',
-            '--limitGenomeGenerateRAM','--limitIObufferSize','--limitOutSAMoneReadBytes','--limitOutSJoneRead','--limitOutSJcollapsed','--limitBAMsortRAM ','--limitSjdbInsertNsj','--outFileNamePrefix','--outTmpDir','--outTmpKeep',
+            '--limitGenomeGenerateRAM','--limitIObufferSize','--limitOutSAMoneReadBytes','--limitOutSJoneRead','--limitOutSJcollapsed','--limitBAMsortRAM','--limitSjdbInsertNsj','--outFileNamePrefix','--outTmpDir','--outTmpKeep',
             '--outStd','--outReadsUnmapped','--outQSconversionAdd','--outMultimapperOrder','--outSAMtype','--outSAMmode','--outSAMstrandField','--outSAMattributes','--outSAMattrIHstart','--outSAMunmapped','--outSAMorder',
             '--outSAMprimaryFlag','--outSAMreadID','--outSAMmapqUnique','--outSAMflagOR','--outSAMflagAND','--outSAMattrRGline','--outSAMheaderHD','--outSAMheaderPG','--outSAMheaderCommentFile','--outSAMfilter','--outSAMmultNmax',
             '--outBAMcompression','--outBAMsortingThreadN','--bamRemoveDuplicatesType','--bamRemoveDuplicatesMate2basesN','--outWigType','--outWigStrand','--outWigReferencesPrefix','--outWigNorm','--outFilterType',