Update Athaliana_transcript_assembly.ipynb

urmi-21 · Feb 21, 2020 · 58ae351 · 58ae351
1 parent 016c9e1
commit 58ae351
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/examples(case-studies)/Athaliana_transcript_assembly/Athaliana_transcript_assembly.ipynb b/examples(case-studies)/Athaliana_transcript_assembly/Athaliana_transcript_assembly.ipynb
@@ -487,24 +487,24 @@
     "**Generate a pdf report**\n",
     "```$ pyrpipe_diagnostic.py report pyrpipe_logs/2019-12-24-16_14_55_pyrpipe.log```\n",
     "\n",
-    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples%28case-studies%29/Athaliana_transcript_assembly/2019-12-24-16_14_55_pyrpipe.pdf)\n",
+    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples%28case-studies%29/Athaliana_transcript_assembly/2020-01-29-12_00_45_pyrpipe.pdf)\n",
     "\n",
     "***Dump all commands to a shell file***\n",
     "```pyrpipe_diagnostic.py shell pyrpipe_logs/2019-12-24-16_14_55_pyrpipe.log```\n",
     "\n",
-    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples(case-studies)/Athaliana_transcript_assembly/2019-12-24-16_14_55_pyrpipe.sh)\n",
+    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples%28case-studies%29/Athaliana_transcript_assembly/2019-12-24-16_14_55_pyrpipe.sh)\n",
     "\n",
     "\n",
     "**Generate multiqc report**\n",
     "```$ pyrpipe_diagnostic.py multiqc -r pyrpipe_logs/2019-12-24-16_14_55_pyrpipe.log```\n",
     "\n",
-    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples(case-studies)/Athaliana_transcript_assembly/multiqc_report.html)\n",
+    "[Output](https://github.com/urmi-21/pyrpipe/blob/master/examples%28case-studies%29/Athaliana_transcript_assembly/multiqc_report.html)\n",
     "\n",
     "\n",
     "**Generate runtime benchmarks**\n",
     "```pyrpipe_diagnostic.py benchmark pyrpipe_logs/2019-12-24-16_14_55_pyrpipe.log```\n",
     "\n",
-    "[Output](https://github.com/urmi-21/pyrpipe/tree/master/examples(case-studies)/Athaliana_transcript_assembly/tmp/benchmark_reports)\n"
+    "[Output](https://github.com/urmi-21/pyrpipe/tree/master/examples%28case-studies%29/Athaliana_transcript_assembly/tmp/benchmark_reports)\n"
    ]
   },
   {