update casestudy

urmi-21 · Feb 27, 2020 · e33904b · e33904b
1 parent 97b4fbb
commit e33904b
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/case_studies/Athaliana_transcript_assembly/Athaliana_transcript_assembly.py b/case_studies/Athaliana_transcript_assembly/Athaliana_transcript_assembly.py
@@ -31,7 +31,8 @@
 
 if not pu.check_files_exist(GENOME):
     print("Downloading genome fasta file")
-    wget="wget ftp://ftp.ensemblgenomes.org/pub/release-46/plants/fasta/arabidopsis_thaliana/dna/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz -q -O "+GENOME+".gz"      pe.execute_command(wget.split(),verbose=True,logs=False)
+    wget="wget ftp://ftp.ensemblgenomes.org/pub/release-46/plants/fasta/arabidopsis_thaliana/dna/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz -q -O "+GENOME+".gz"      
+    pe.execute_command(wget.split(),verbose=True,logs=False)
     pe.execute_command(['gunzip',GENOME+".gz"],verbose=True,logs=False)
 
 if not pu.check_files_exist(GTF):