testsToConda

.travis.yml

@@ -93,6 +93,26 @@ install:
   - wget https://sourceforge.net/projects/bbmap/files/BBMap_38.73.tar.gz/download -O /tmp/bbtools.tar.gz
   - tar -xvzf /tmp/bbtools.tar.gz
   - export PATH=$PATH:$PWD/bbmap/
+  #use conda
+  - sudo apt-get update
+  # We do this conditionally because it saves us some downloading if the
+  # version is the same.
+  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
+      wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh -O miniconda.sh;
+    else
+      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+    fi
+  - bash miniconda.sh -b -p $HOME/miniconda
+  - source "$HOME/miniconda/etc/profile.d/conda.sh"
+  - hash -r
+  - conda config --set always_yes yes --set changeps1 no
+  - conda update -q conda
+  # Useful for debugging any issues with conda
+  - conda info -a
+  - cd tests
+  - bash build_test_env.sh
+  - conda activate pyrpipe_test
+  - cd ..