updateDocs

urmi-21 · Jan 15, 2020 · f929f78 · f929f78
1 parent 5de5e97
commit f929f78
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/pyrpipe/mapping.py b/pyrpipe/mapping.py
@@ -36,14 +36,19 @@ def perform_alignment(self,sra_object):
 
 class Hisat2(Aligner):
     """This class represents hisat2 program.
+    
        Parameters
        ----------
-       hisat2_index string
+       
+       hisat2_index: string
             path to q histat2 index. This index will be used when hisat is invoked using this object.
-       **kwargs dict
+            
+       **kwargs: dict
             parameters passed to the hisat2 program. These parameters could be overridden later when running hisat.
+            
     Attributes
     ----------
+    
     """ 
     def __init__(self,hisat2_index="",**kwargs):