Scripts and Data for the Simulation Study

"HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations" Naoto Usuyama et al. usuyama@hgc.jp

scripts: A ruby script for generating a set of sam files (tumor and normal) given depth, read_length, positions of variants, and haplotype frequencies.

data: The data that we used in the paper. Note: please, concat the negative samples with read length 1000: cat 1000.negative.zip.split.* > 1000.negative.zip