BSgenome.Ecoli.NCBI.K12.MG1655

The package provides a full genome assembly of E. coli str. K12, substr. MG1655. Data source: NCBI.

Installation

You can install the development version of BSgenome.Ecoli.NCBI.K12.MG1655 from GitHub with:

# install.packages("devtools")
devtools::install_github("utubun/BSgenome.Ecoli.NCBI.K12.MG1655")

Example

Load E.coli genome, and assign it to the variable genome:

library(BSgenome.Ecoli.NCBI.K12.MG1655)

genome <- BSgenome.Ecoli.NCBI.K12.MG1655

Get the information about the genome:

sprintf(
  'Genome:\t%s\nName:\t%s\nOrganism:\t%s\nProvider:\t%s\nReleased:\t%s',
  sapply(c(bsgenomeName, commonName, organism, provider, releaseDate), \(f) {f(genome)})
)

List the methods available for the genome:

methods(class = class(genome))

More examples

vignette("GenomeSearching", package="BSgenome")