mri2mri

convert one type of MRI to another

• Free software: 3-clause BSD license
• Documentation: https://uw-biomedical-ml.github.io/mri2mri.

Installation

To install the software, you will first need to install pytorch

Please follow the installation instructions on their website first.

Then, download the source, navigate your shell to the top-level source directory and run:

pip install -r requirements.txt
pip install .

If you intend to make changes and work on development of MRI2MRI, please run:

pip install -r requirements.txt
pip install -r requirements-dev.txt
pip install -e .

Usage

We only support T1 weighted to T2 weighted, and T2 weighted to T1 weighted translation right now. For example:

mri2mri --input path_to_input_T1.nii.gz --which_transform t1w2t2w

You can use mri2mri --help to see more options