Named Entity Recognition and Relation Extraction performance

Named Entity Recognition

Entity	Precision(%)	Recall(%)	F1(%)
Acuteness	82.6	97.7	89.5
Age	92.1	95.4	93.7
Allergy	100.0	93.5	96.6
Allergy_Name	100.0	44.4	61.5
And	66.2	69.9	68.0
Assertion	63.2	65.6	64.4
Assertion-Negation	48.1	61.9	54.1
Birth	100.0	100.0	100.0
Condition	77.6	80.0	78.8
Condition_Name	80.3	78.3	79.3
Contraindication	83.3	78.9	81.0
Criteria_Count	100.0	100.0	100.0
Death	25.0	33.3	28.5
Drug	75.3	86.8	80.7
Drug_Name	77.0	87.2	81.8
Encounter	65.8	62.7	64.2
Encounter_Type	76.9	68.9	72.7
Eq_Comparison	84.9	85.1	85.0
Eq_Operator	94.2	96.3	95.2
Eq_Temporal_Period	90.4	89.2	89.8
Eq_Temporal_Recency	68.9	76.9	72.7
Eq_Temporal_Unit	95.7	97.6	96.6
Eq_Unit	84.0	87.6	85.8
Eq_Value	92.2	94.9	93.5
Ethnicity	100.0	66.6	80.0
Exception	78.9	71.4	75.0
Family_Member	66.6	28.5	40.0
Immunization	0.0	0.0	0.0
Indication	75.0	100.0	85.7
Insurance	0.0	0.0	0.0
Language	92.5	96.1	94.3
Life_Stage_And_Gender	93.8	93.2	93.5
Location	67.2	58.7	62.7
Modifier	68.0	57.3	62.4
Negation	76.8	82.4	79.5
Observation	68.0	63.0	65.4
Observation_Name	72.7	64.2	68.2
Observation_Specimen	66.6	50.0	57.1
Or	90.0	94.8	92.3
Other	83.9	97.9	90.3
Polarity	86.1	82.6	84.3
Procedure	69.3	73.8	71.4
Procedure_Name	73.8	68.5	71.0
Provider	60.0	18.7	28.5
Risk	93.1	96.4	94.7
Severity	86.0	91.9	88.8
Stability	82.7	67.6	74.4
Study	67.7	83.7	74.9
Temporal_Connection	81.7	78.3	80.0

Relation Extraction

Relation	Precision(%)	Recall(%)	F1(%)
Acuteness	81.4	100.0	89.8
Arg1	78.6	93.2	85.3
Arg2	83.5	95.4	89.1
Asserted	67.7	86.6	76.0
Contraindicates	93.3	100.0	96.5
Criteria	100.0	100.0	100.0
Dose	100.0	100.0	100.0
Duration	40.5	83.3	54.5
Eq-Comparison	83.8	96.8	89.8
Except	81.2	81.2	81.2
From	75.0	92.3	82.7
Has	43.7	87.5	58.3
Indication-For	40.0	66.6	50.0
Is-Other	82.3	100.0	90.3
Location	78.2	100.0	87.8
Min-Value	100.0	100.0	100.0
Minimum-Count	61.9	68.4	65.0
Modifies	87.9	95.0	91.3
Name	81.2	100.0	89.6
Negates	69.1	94.4	79.8
Polarity	90.0	96.4	93.1
Provider	36.8	87.5	51.8
Refers-To	27.2	60.0	37.5
Risk-For	100.0	100.0	100.0
Severity	88.6	95.9	92.1
Stability	75.0	84.3	79.4
Stage	100.0	73.3	84.6
Study-Of	61.1	78.5	68.7
Temporal-Unit	100.0	100.0	100.0
Temporality	79.5	92.8	85.7
Type	100.0	66.6	80.0
Abbrev-Of	82.9	82.9	82.9
Caused-By	50.7	86.4	64.0
Equivalent-To	42.6	68.6	52.6
Example-Of	83.3	93.5	88.1
Found-By	48.8	84.6	61.9
If-Then	47.6	74.0	57.9
Treatment-For	52.1	78.2	62.6
Using	51.7	93.5	66.6