OLIVO-parser_DK.py
python script to parse all stites in hg38 with regexp patern '[GC]g[GC][GC][GC]' comments: case nonsesitive, overlapped, both strands
run: python OLIVO-parser_DK.py gomome\fasta\location result: file hg38_SGSS.bedgraph ~882Mb
ENCODE_download.sh
shell script to bach download TF tracks form ENCODE "ENCODE_TF_HCT116.txt"
run: ./ENCODE_download.sh ENCODE_TF_HCT116.txt result: directiry .\ENCODE_TF_HCT116\names\ with TFs bedfiles with TF name
analys.sh
shell script to create tabe of coverage regions in 10genes_TSS.bed with TF region from .\ENCODE_TF_HCT116\names\ directory
run: ./analys.sh >output.txt result: output.txt table with header "Gene TF pos cover index"
drawing.R
R script to draw a picture of coverage TF by TSS regions or otherwise
result: Figure S2