Fix build bug with older arrow version. (#1897) #6305
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| # Copyright 2020-2023 Alibaba Group Holding Limited. | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| name: Vineyard CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/' | |
| - '**/*.rst' | |
| - '**/*.md' | |
| - '**/*.txt' | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/' | |
| - '**/*.rst' | |
| - '**/*.md' | |
| - '**/*.txt' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.repository }}-${{ github.event.number || github.head_ref || github.sha }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| env: | |
| CMAKE_C_COMPILER_LAUNCHER: ccache | |
| CMAKE_CXX_COMPILER_LAUNCHER: ccache | |
| jobs: | |
| ci: | |
| runs-on: ${{ matrix.os }} | |
| if: ${{ github.repository == 'v6d-io/v6d' }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04] | |
| metadata: [local, etcd, redis] # disable redis for now as it seems has some nondeterministic bugs | |
| exclude: | |
| - metadata: local | |
| - metadata: redis | |
| env: | |
| RUNNER_ARGS: "--meta=${{ matrix.metadata }}" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Free disk space | |
| if: false | |
| run: | | |
| bash .github/free-disk-space.sh | |
| - uses: dorny/paths-filter@v2 | |
| id: changes | |
| with: | |
| filters: | | |
| mimalloc: | |
| - 'modules/malloc/**' | |
| - 'src/common/memory/**' | |
| - 'src/server/memory/**' | |
| - 'thirdparty/mimalloc/**' | |
| - name: Generate Summary for Submodules | |
| run: | | |
| git submodule > git-modules.txt | |
| cat git-modules.txt | |
| - name: Cache for ccache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.ccache | |
| key: ${{ runner.os }}-${{ matrix.metadata }}-ccache-${{ hashFiles('**/git-modules.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.metadata }}-ccache- | |
| - name: Install Dependencies for Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| export PATH=/usr/lib/ccache:$PATH | |
| sudo apt update -y | |
| sudo apt install -y ca-certificates \ | |
| ccache \ | |
| cmake \ | |
| doxygen \ | |
| fuse3 \ | |
| libboost-all-dev \ | |
| libcurl4-openssl-dev \ | |
| libfuse3-dev \ | |
| libgflags-dev \ | |
| libgoogle-glog-dev \ | |
| libgmock-dev \ | |
| libgrpc-dev \ | |
| libgrpc++-dev \ | |
| libkrb5-dev \ | |
| libmpich-dev \ | |
| libprotobuf-dev \ | |
| librdkafka-dev \ | |
| libgsasl7-dev \ | |
| librdkafka-dev \ | |
| libssl-dev \ | |
| libunwind-dev \ | |
| libuv1-dev \ | |
| libxml2-dev \ | |
| libz-dev \ | |
| lsb-release \ | |
| redis-server \ | |
| pandoc \ | |
| protobuf-compiler-grpc \ | |
| python3-pip \ | |
| uuid-dev \ | |
| wget | |
| # install apache-arrow | |
| wget https://apache.jfrog.io/artifactory/arrow/$(lsb_release --id --short | tr 'A-Z' 'a-z')/apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb | |
| sudo apt install -y -V ./apache-arrow-apt-source-latest-$(lsb_release --codename --short).deb | |
| sudo apt update | |
| sudo apt install -y libarrow-dev \ | |
| libarrow-dataset-dev \ | |
| libarrow-acero-dev \ | |
| libarrow-flight-dev \ | |
| libgandiva-dev \ | |
| libparquet-dev | |
| # install deps for java | |
| sudo apt install -y default-jdk-headless maven | |
| # install clang-format | |
| sudo curl -L https://github.com/muttleyxd/clang-tools-static-binaries/releases/download/master-1d7ec53d/clang-format-11_linux-amd64 --output /usr/bin/clang-format | |
| sudo chmod +x /usr/bin/clang-format | |
| # avoid possible permission errors | |
| ccache -o cache_dir=~/.ccache | |
| sudo mkdir -p ~/.ccache | |
| sudo chmod -R a+wrx ~/.ccache | |
| # install python packages for codegen, and io adaptors | |
| sudo pip3 install -U "Pygments>=2.4.1" | |
| sudo pip3 install -r requirements-setup.txt -r requirements.txt -r requirements-dev.txt | |
| # install linters | |
| sudo pip3 install auditwheel black isort flake8 twine | |
| - name: Setup tmate session | |
| if: false | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Setup SSH environment | |
| run: | | |
| # avoid access node by DNS hostnames | |
| r=`cat /etc/hosts | grep $(hostname) || true` | |
| if [ -z "${r}" ];then export hn=$(hostname); sudo -E bash -c 'echo "127.0.0.1 ${hn}" >> /etc/hosts'; fi | |
| cat /etc/hosts | |
| # setup SSH server to allow login without password | |
| cat > sshd_config <<EOF | |
| SyslogFacility AUTHPRIV | |
| PermitRootLogin yes | |
| AuthorizedKeysFile .ssh/authorized_keys | |
| PasswordAuthentication yes | |
| ChallengeResponseAuthentication no | |
| UsePAM yes | |
| UseDNS no | |
| X11Forwarding no | |
| PrintMotd no | |
| EOF | |
| sudo mv sshd_config /etc/ssh/sshd_config | |
| sudo systemctl restart ssh | |
| # generate proper SSH key | |
| cat /dev/zero | ssh-keygen -t rsa -b 4096 -N '' -f ~/.ssh/id_rsa | |
| # add key to authorized_keys file | |
| cat ~/.ssh/id_rsa.pub | tee -a ~/.ssh/authorized_keys | |
| # ensure the permissions of SSH files | |
| chmod 600 ~/.ssh/authorized_keys | |
| chmod 700 ~/.ssh | |
| sudo chmod -c 0755 ~/ | |
| ls -la ~/.ssh | |
| # test SSH login, without password | |
| ssh -vvv -i ~/.ssh/id_rsa -o BatchMode=yes -o StrictHostKeyChecking=no $(whoami)@localhost | |
| - name: Setup tmate session | |
| if: false | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: CMake | |
| run: | | |
| export PATH=/usr/lib/ccache:$PATH | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=Debug \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DUSE_ASAN=ON \ | |
| -DBUILD_VINEYARD_COVERAGE=ON \ | |
| -DBUILD_VINEYARD_PYTHON_BINDINGS=ON \ | |
| -DBUILD_VINEYARD_BASIC=ON \ | |
| -DBUILD_VINEYARD_IO=ON \ | |
| -DBUILD_VINEYARD_IO_KAFKA=ON \ | |
| -DBUILD_VINEYARD_MALLOC=ON \ | |
| -DBUILD_VINEYARD_HOSSEINMOEIN_DATAFRAME=ON \ | |
| -DBUILD_VINEYARD_FUSE=ON \ | |
| -DBUILD_VINEYARD_FUSE_PARQUET=ON \ | |
| -DBUILD_VINEYARD_GRAPH=OFF \ | |
| -DBUILD_VINEYARD_GRAPH_WITH_GAR=OFF \ | |
| -DBUILD_VINEYARD_TESTS_ALL=ON | |
| if [ "${{ matrix.metadata }}" == "redis" ]; then | |
| cmake .. -DBUILD_VINEYARD_SERVER_REDIS=ON | |
| fi | |
| - name: Cpp format and lint | |
| run: | | |
| cd build | |
| function prepend() { while read line; do echo "${1}${line}"; done; } | |
| make vineyard_clformat | |
| GIT_DIFF=$(git diff --ignore-submodules) | |
| if [[ -n $GIT_DIFF ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| clang-format failures found!" | |
| echo "|" | |
| echo "$GIT_DIFF" | prepend "| " | |
| echo "|" | |
| echo "| Run: " | |
| echo "|" | |
| echo "| make vineyard_clformat" | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "|" | |
| echo "| Ensure you are working with clang-format-11, which can be obtained from" | |
| echo "|" | |
| echo "| https://github.com/muttleyxd/clang-tools-static-binaries/releases " | |
| echo "|" | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| function ec() { [[ "$1" == "-h" ]] && { shift && eval $* > /dev/null 2>&1; ec=$?; echo $ec; } || eval $*; ec=$?; } | |
| ec make vineyard_cpplint | |
| if [[ "$ec" != "0" ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| cpplint failures found! Run: " | |
| echo "|" | |
| echo "| make vineyard_cpplint" | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| - name: Python format and lint | |
| run: | | |
| function prepend() { while read line; do echo "${1}${line}"; done; } | |
| python3 setup.py lint --inplace=true | |
| GIT_DIFF=$(git diff --ignore-submodules) | |
| if [[ -n $GIT_DIFF ]]; then | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| echo "| black (python format) failures found!" | |
| echo "|" | |
| echo "$GIT_DIFF" | prepend "| " | |
| echo "|" | |
| echo "|Run: " | |
| echo "|" | |
| echo "| python3 setup.py lint --inplace=true" | |
| echo "|" | |
| echo "| to fix this error." | |
| echo "|" | |
| echo "| The tool black can be installed by" | |
| echo "|" | |
| echo "| pip3 install black isort flake8" | |
| echo "|" | |
| echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" | |
| exit -1 | |
| fi | |
| - name: Build | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64 | |
| pushd build | |
| make -j`nproc` | |
| make vineyard_tests -j`nproc` | |
| make vineyard_client_python -j`nproc` | |
| make ccache-stats | |
| sudo make install | |
| popd | |
| # not used anymore | |
| rm -rf build/lib* | |
| # build & install vineyard for python | |
| rm -rf build/lib* build/bdist.* | |
| python3 setup.py bdist_wheel | |
| for pkg in airflow bdist dask pyspark io kedro ml llm; do | |
| rm -rf build/lib* build/bdist.* | |
| python3 setup_${pkg}.py bdist_wheel | |
| done | |
| # install python packages | |
| twine check dist/*.whl | |
| sudo pip3 install dist/*.whl -U | |
| # don't upload incomplete vineyard_bdist to release | |
| rm -rf dist/vineyard_bdist* || true | |
| - name: Get test data | |
| run: | | |
| git clone https://github.com/GraphScope/gstest.git --depth=1 | |
| - name: Setup tmate session | |
| if: false | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Run llm tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-llm | |
| - name: Run cpp tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-cpp | |
| - name: Run python tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-python | |
| - name: Run deployment tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-deployment --with-migration | |
| - name: Run llm python tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-llm-python | |
| - name: Run contrib/thirdparty tests | |
| if: false # lack of heavy dependencies like torch/tensorflow in CI | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| export VINEYARD_SPARK_PATH=`pwd`/java/spark/target/vineyard-spark_2.12-0.1-SNAPSHOT-jar-with-dependencies.jar | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-contrib | |
| - name: Run I/O tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-io | |
| - name: Run FUSE tests | |
| run: | | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib:/usr/local/lib64:/usr/local/lib/x86_64-linux-gnu | |
| export VINEYARD_DATA_DIR=`pwd`/gstest | |
| export TMPDIR="${TMPDIR:-$(dirname $(mktemp))}" | |
| rm -rf default.etcd | |
| rm -rf /dev/shm/etcd* | |
| python3 test/runner.py $RUNNER_ARGS --with-fuse | |
| - name: Run CMake tests | |
| run: | | |
| cmake -S test/vineyard-cmake-example -B build/vineyard-cmake-example | |
| cmake --build build/vineyard-cmake-example | |
| - name: Upload Coverage | |
| if: runner.os == 'Linux' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| verbose: true | |
| - name: Extract tag name | |
| id: tag | |
| if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') }} | |
| run: echo "TAG=${GITHUB_REF#refs/tags/}" >> $GITHUB_OUTPUT | |
| - name: Upload vineyard contrib wheels to tagged release | |
| uses: svenstaro/upload-release-action@v2 | |
| if: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') && github.repository == 'v6d-io/v6d' }} | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: dist/*vineyard*.whl | |
| file_glob: true | |
| tag: ${{ steps.tag.outputs.TAG }} | |
| prerelease: false | |
| overwrite: true | |
| body: "vineyard-contrib ${{ steps.tag.outputs.TAG }}" |