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ChemoPersistance
ChemoPersistance PublicScripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment
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scChIPseq_DataEngineering
scChIPseq_DataEngineering PublicThis pipeline is dedicated to create single-cell count matrix from paired-end raw fastQ files coming from single-cell ChIP-seq experiments.
Repositories
- IDclust Public
IDclust is an unsupervised method for clustering single-cell datasets (scRNA, scEpigenome). The cells are iteratively re-processed and re-clustered. Subclusters are created provided they are significantly different from each other.
vallotlab/IDclust’s past year of commit activity - scCUT-Tag_10X Public
vallotlab/scCUT-Tag_10X’s past year of commit activity - scNanoCUTTag_10X Public
vallotlab/scNanoCUTTag_10X’s past year of commit activity - scChIPseq_DataEngineering Public
This pipeline is dedicated to create single-cell count matrix from paired-end raw fastQ files coming from single-cell ChIP-seq experiments.
vallotlab/scChIPseq_DataEngineering’s past year of commit activity - benchmark_scepigenomics Public
vallotlab/benchmark_scepigenomics’s past year of commit activity - ChemoPersistance Public
Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment
vallotlab/ChemoPersistance’s past year of commit activity - ChromSCape_benchmarking Public
Scripts and dataset to reproduce benchmarking of SnapATAC, CisTopic, Cusanovich2018 and EpiScanpy & scOrange on single-cell H3K27me3 cell mix from 'Interactive analysis of single-cell epigenomic landscapes with ChromSCape'
vallotlab/ChromSCape_benchmarking’s past year of commit activity
