FIX: XXMotif.py does not parse motif results

[kirbyziegler]

Running: test_tools.py

[XXMotif.py]: line 93: motifs, stdout, stderr = self._read_and_label_motifs(outfile, stdout, stderr, fmt="xxmotif")
[motifprogram.py]: line 41: motifs = read_motifs(outfile, fmt="meme")
[motif.py]: line 1591: def read_motifs(infile=None, fmt="pfm", as_dict=False):
[motif.py]: line 1621: motifs = _read_motifs_from_filehandle(f, fmt)

• The fmt variable is being overwritten from "xxmotif" to "meme" by motifprogram.py (line 41)

Solution:

[motifprogram.py]: line 41: motifs = read_motifs(outfile, fmt)

[simonvh]

Good call!