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Update README.md #89

Merged
merged 3 commits into from Jun 5, 2020
Merged

Update README.md #89

merged 3 commits into from Jun 5, 2020

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ngreenwald
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Updates the readme to reflect the current workflow. Let me know what areas could use further improvement.

@willgraf, one question for you. The current code to mount the codebase doesn't actually work.

-v $PWD/caliban_toolbox:/usr/local/lib/python3.5/dist-packages/caliban_toolbox/
The instructions were probably copied from deepcell-tf. However, in this docker there's nothing inside dist-packages, so mounting it does nothing.

Is there somewhere else I should be looking for docker's version of the scripts?

@willgraf
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The docker base image you're using is python:3.7 so maybe the mount command should looke like:

v $PWD/caliban_toolbox:/usr/local/lib/python3.7/dist-packages/caliban_toolbox/

Is this something that should even be included in the docs? It's a useful hack for development, but not necessary for using it.

@ngreenwald
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Okay, the scripts are actually located in /site-packages, not /dist-packages.

Maybe because of how it's installed?

Happy to remove if you don't think it's necessary

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@ngreenwald
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Awesome, let me know what you think of the new version

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@geneva-miller geneva-miller left a comment

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Some very minor changes/suggestions.

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@MekWarrior
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Looks good. The only thing I think should be added is a description of our ontology. But that is covered as outstanding in #57

@MekWarrior MekWarrior merged commit 3ff33c1 into master Jun 5, 2020
@MekWarrior MekWarrior deleted the readme-update branch June 5, 2020 18:25
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4 participants