Skip to content

Commit

Permalink
Add example image to README
Browse files Browse the repository at this point in the history
  • Loading branch information
elaubsch committed Jun 11, 2022
1 parent 07abf71 commit 404c25b
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,8 @@

`deepcell-spots` is a deep learning library for fluorescent spot detection image analysis. It allows you to apply pre-existing models and train new deep learning models for spot detection. It is written in Python and built using [TensorFlow](https://github.com/tensorflow/tensorflow), [Keras](https://www.tensorflow.org/guide/keras) and [DeepCell](https://github.com/vanvalenlab/deepcell-tf). More detailed documentation is available [here](https://deepcell-spots.readthedocs.io/).

# ![Spot Detection Example](https://raw.githubusercontent.com/vanvalenlab/deepcell-spots/mly/docs/docs/images/spot_montage.png)

## DeepCell Spots Application

`deepcell-spots` contains an applications that greatly simplify the implementation of deep learning models for spot detection. `deepcell-spots.applications.SpotDetection` contains a pre-trained model for fluorescent spot detection on images derived from assays such as RNA FISH and in-situ sequencing. This model returns a list of coordinate locations for fluorescent spots detected in the input image. `deepcell-spots.applications.Polaris` pairs this spot detection model with [DeepCell](https://github.com/vanvalenlab/deepcell-tf) models for nuclear and cytoplasmic segmentation.
Expand Down

0 comments on commit 404c25b

Please sign in to comment.