Update copyright to 2022 (#14)

* Remove SSH from postcode GitHub cloning * Change scikit-image requirement * Update copyright year to 2022
vanvalenlab · Jan 18, 2022 · e45bf0c · e45bf0c
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diff --git a/README.md b/README.md
@@ -56,7 +56,7 @@ coords = app.predict(image,threshold=0.9)
 
 ## Copyright
 
-Copyright © 2019-2021 [The Van Valen Lab](http://www.vanvalen.caltech.edu/) at the California Institute of Technology (Caltech), with support from the Shurl and Kay Curci Foundation, Google Research Cloud, the Paul Allen Family Foundation, & National Institutes of Health (NIH) under Grant U24CA224309-01.
+Copyright © 2019-2022 [The Van Valen Lab](http://www.vanvalen.caltech.edu/) at the California Institute of Technology (Caltech), with support from the Shurl and Kay Curci Foundation, Google Research Cloud, the Paul Allen Family Foundation, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 All rights reserved.
 
 ## License

diff --git a/deepcell_spots/__init__.py b/deepcell_spots/__init__.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/_version.py b/deepcell_spots/_version.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.
@@ -32,5 +32,5 @@
 __author__ = 'The Van Valen Lab'
 __author_email__ = 'vanvalen@caltech.edu'
 __license__ = 'LICENSE'
-__copyright__ = 'Copyright 2019-2021 The Van Valen Lab at the ' \
+__copyright__ = 'Copyright 2019-2022 The Van Valen Lab at the ' \
     'California Institute of Technology (Caltech)'
diff --git a/deepcell_spots/applications/__init__.py b/deepcell_spots/applications/__init__.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/applications/polaris.py b/deepcell_spots/applications/polaris.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/cluster_vis.py b/deepcell_spots/cluster_vis.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/cluster_vis_test.py b/deepcell_spots/cluster_vis_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/data_utils.py b/deepcell_spots/data_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/data_utils_test.py b/deepcell_spots/data_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet.py b/deepcell_spots/dotnet.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/dotnet_losses.py b/deepcell_spots/dotnet_losses.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_alignment.py b/deepcell_spots/image_alignment.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_alignment_test.py b/deepcell_spots/image_alignment_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_generators.py b/deepcell_spots/image_generators.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/image_generators_test.py b/deepcell_spots/image_generators_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/multiplex.py b/deepcell_spots/multiplex.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/multiplex_test.py b/deepcell_spots/multiplex_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/point_metrics.py b/deepcell_spots/point_metrics.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/point_metrics_test.py b/deepcell_spots/point_metrics_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/postprocessing_utils.py b/deepcell_spots/postprocessing_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/postprocessing_utils_test.py b/deepcell_spots/postprocessing_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/preprocessing_utils.py b/deepcell_spots/preprocessing_utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/preprocessing_utils_test.py b/deepcell_spots/preprocessing_utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/simulate_data.py b/deepcell_spots/simulate_data.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/simulate_data_test.py b/deepcell_spots/simulate_data_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/singleplex.py b/deepcell_spots/singleplex.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/singleplex_test.py b/deepcell_spots/singleplex_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/spot_em.py b/deepcell_spots/spot_em.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/spot_em_test.py b/deepcell_spots/spot_em_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/training.py b/deepcell_spots/training.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils.py b/deepcell_spots/utils.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/deepcell_spots/utils_test.py b/deepcell_spots/utils_test.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.

diff --git a/requirements.txt b/requirements.txt
@@ -1,7 +1,7 @@
 pandas>=1,<2
 numpy>=1.16.6,<2
 scipy>=1.1.0,<2
-scikit-image>=0.14.5
+scikit-image~=0.16.2
 scikit-learn>=0.20.4,<1
 tensorflow~=2.5.1
 jupyter>=1.0.0,<2

diff --git a/setup.py b/setup.py
@@ -1,4 +1,4 @@
-# Copyright 2019-2021 The Van Valen Lab at the California Institute of
+# Copyright 2019-2022 The Van Valen Lab at the California Institute of
 # Technology (Caltech), with support from the Paul Allen Family Foundation,
 # Google, & National Institutes of Health (NIH) under Grant U24CA224309-01.
 # All rights reserved.
@@ -71,7 +71,7 @@
         'torch',
         'torchvision',
         'pyro-ppl',
-        'postcode @ git+ssh://git@github.com/gerstung-lab/postcode.git'
+        'postcode @ git+https://github.com/gerstung-lab/postcode.git'
     ],
     extras_require={
         'tests': [