Refactor EM functions to use DataFrames #24
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elaubsch
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May 27, 2022
* Update to TF 2.8 and deepcell 0.12.0 * Update supported python versions * Loosen scikit-image requirement * Fix deprecated skimage.draw.circle * Refactor EM functions to use DataFrames (#24) * Fix keras imports * Raise error for image dim * Change cache pip * Update application model * Update requirements and Python versions in setup.py * Bump release version * Update deepcell version in README * Update deepcell version for published Docker image * Update badges
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This PR introduces large changes to the functions used to handle coordinates data during EM for training data creation. The new functions use Pandas DataFrames and dictionaries instead of nested lists of lists, which makes them much less fragile and opaque. No changes were made to the functions used to perform EM, so no changes to the EM output are expected.