Add ISBI utility functions and update deprecated networkx functions. #17
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connected_component_subgraphs is deprecated in networkx 2.1, which suggests to use `(G.subgraph(c) for c in connected_components(G))` instead.
Used negative if and continue to un-indent postive if blocks. Directly add nodes to the return dictionary instead of adding to a list and THEN a dictionary.
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Re-opening as the issue was resolved (problem lay in |
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Added several functions from the tracking benchmarking notebook to
isbi_utils.py. These are rarely used and only for comparingdeepcell-trackingoutput with the standard ISBI output format.Additionally, edited the postprocessing functions to no longer use functions deprecated in networkx 2.1, allowing the dependencies to allow networkx>=2.4.
Resolves #10 and resolves #11