warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/verify/seqvars.rs:44:17 | 44 | #[arg(long, default_value_t = false)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/verify/seqvars.rs:40:17 | 40 | #[arg(long, default_value_t = true)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/server/mod.rs:33:17 | 33 | #[arg(long, default_value_t = 8080)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/server/mod.rs:26:17 | 26 | #[arg(long, default_value_t = false)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2772:17 | 2772 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2590:17 | 2590 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2489:17 | 2489 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2393:13 | 2393 | entries[sample_no].name = samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2333:17 | 2333 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2219:17 | 2219 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2123:17 | 2123 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:2048:17 | 2048 | entries[sample_no].name = self.samples[sample_no].clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `entries[sample_no].name.clone_from(&self.samples[sample_no])` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:1881:13 | 1881 | tsv_record.chromosome2 = tsv_record.chromosome.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.chromosome2.clone_from(&tsv_record.chromosome)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/strucvars/mod.rs:1875:13 | 1875 | tsv_record.chromosome2 = bnd.chrom.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.chromosome2.clone_from(&bnd.chrom)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/strucvars/mod.rs:89:17 | 89 | #[arg(long, default_value_t = 50)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/strucvars/mod.rs:86:17 | 86 | #[arg(long, default_value_t = 50)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/strucvars/mod.rs:83:17 | 83 | #[arg(long, default_value_t = 0.8)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: this expression creates a reference which is immediately dereferenced by the compiler --> src/annotate/seqvars/mod.rs:1649:37 | 1649 | let annotator = setup_annotator(&args, assembly)?; | ^^^^^ help: change this to: `args` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow = note: `#[warn(clippy::needless_borrow)]` on by default

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/seqvars/mod.rs:1130:25 | 1130 | tsv_record.refseq_hgvs_p = ann.hgvs_p.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.refseq_hgvs_p.clone_from(&ann.hgvs_p)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/seqvars/mod.rs:1129:25 | 1129 | tsv_record.refseq_hgvs_c = ann.hgvs_t.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.refseq_hgvs_c.clone_from(&ann.hgvs_t)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/seqvars/mod.rs:1101:25 | 1101 | tsv_record.ensembl_hgvs_p = ann.hgvs_p.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.ensembl_hgvs_p.clone_from(&ann.hgvs_p)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones

warning: assigning the result of `Clone::clone()` may be inefficient --> src/annotate/seqvars/mod.rs:1100:25 | 1100 | tsv_record.ensembl_hgvs_c = ann.hgvs_t.clone(); | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `clone_from()`: `tsv_record.ensembl_hgvs_c.clone_from(&ann.hgvs_t)` | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assigning_clones = note: `#[warn(clippy::assigning_clones)]` on by default

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/seqvars/mod.rs:107:17 | 107 | #[arg(long, default_value_t = false)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/seqvars/mod.rs:103:17 | 103 | #[arg(long, default_value_t = true)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/seqvars/mod.rs:100:29 | 100 | #[arg(long, value_enum, default_value_t = csq::TranscriptSource::Both)] | ^^^^^^^^^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv

warning: current MSRV (Minimum Supported Rust Version) is `1.64.0` but this item is stable since `1.70.0` --> src/annotate/seqvars/ann.rs:390:5 | 390 | FromStr, | ^^^^^^^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#incompatible_msrv = note: `#[warn(clippy::incompatible_msrv)]` on by default = note: this warning originates in the derive macro `FromStr` (in Nightly builds, run with -Z macro-backtrace for more info)

warning: unused variable: `header` --> src/annotate/seqvars/mod.rs:596:9 | 596 | header: &VcfHeader, | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_header` | = note: `#[warn(unused_variables)]` on by default

warning: bound is defined in more than one place --> src/common/io/std.rs:73:19 | 73 | pub fn read_lines<P: AsRef<Path>>( | ^ ... 77 | P: AsRef<Path>, | ^ | = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#multiple_bound_locations = note: `#[warn(clippy::multiple_bound_locations)]` on by default

warning: unused import: `crate::finalize_buf_writer` --> src/annotate/seqvars/mod.rs:55:5 | 55 | use crate::finalize_buf_writer; | ^^^^^^^^^^^^^^^^^^^^^^^^^^

warning: unused import: `noodles_vcf::reader::Builder as VariantReaderBuilder` --> src/annotate/seqvars/mod.rs:31:5 | 31 | use noodles_vcf::reader::Builder as VariantReaderBuilder; | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

warning: unused import: `noodles_bgzf::Writer as BgzfWriter` --> src/annotate/seqvars/mod.rs:25:5 | 25 | use noodles_bgzf::Writer as BgzfWriter; | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

warning: unused import: `futures::future::BoxFuture` --> src/annotate/seqvars/mod.rs:24:5 | 24 | use futures::future::BoxFuture; | ^^^^^^^^^^^^^^^^^^^^^^^^^^