Fixing displaying of beacon information in results table. (#243)

HISTORY.rst

@@ -10,6 +10,7 @@ End-User Summary
 ================
 
 - Fixing Kiosk mode of VarFish.
+- Fixing displaying of beacon information in results table.
 
 Full Change List
 ================
@@ -19,6 +20,7 @@ Full Change List
     - Using custom middleware for kiosk user (#215).
 - Kiosk annotation now uses ``set -x`` flag if ``settings.DEBUG`` is true.
 - Mapping kiosk jobs to import queue.
+- Fixing displaying of beacon information in results table.
 
 -------
 v0.23.9

config/settings/base.py

@@ -610,6 +610,9 @@
 # Logging
 # ------------------------------------------------------------------------------
 
+# Custom logging level
+LOGGING_LEVEL = env.str("LOGGING_LEVEL", "DEBUG" if DEBUG else "ERROR")
+
 LOGGING_APPS = env.list(
     "LOGGING_APPS",
     default=[

requirements/base.txt

@@ -82,7 +82,7 @@ xlsxwriter >=1.4.3, <1.5
 
 # Writing of VCF files
 vcfpy >=0.13.3, <0.14
-pysam >=0.16.0.1, <0.17
+pysam >=0.18, <0.19
 
 # SQL Alchemy and Django integrate
 # TODO: upgrade?

varfish/static/js/filter_form.js

@@ -256,6 +256,10 @@ function loadVariantDetails(row, cell, show=false) {
         }
         $('[data-toggle="tooltip"]').tooltip({container: "body"});
         $('[data-toggle="popover"]').popover({container: "body"});
+        var whitelist = $.fn.tooltip.Constructor.Default.whiteList
+        whitelist.iframe = ['src', 'style', 'width', 'height', 'frameborder', 'vspace', 'hspace']
+        // Alternative: skip sanitize function entirely
+        //$('[data-toggle="popover"]').popover({sanitizeFn: function(content) { return content }})
         $('body').on('click', function (e) {
           let element = $('.omim-popover');
           // hide any open popovers when the anywhere else in the body is clicked

varfish/static/js/state_machine.js

@@ -109,6 +109,10 @@ function updateTableDisplay() {
   );
   $('[data-toggle="tooltip"]').tooltip({boundary: 'window', container: 'body'});
   $('[data-toggle="popover"]').popover({boundary: 'window', container: 'body'});
+  var whitelist = $.fn.tooltip.Constructor.Default.whiteList
+  whitelist.iframe = ['src', 'style', 'width', 'height', 'frameborder', 'vspace', 'hspace']
+  // Alternative: skip sanitize function entirely
+  //$('[data-toggle="popover"]').popover({sanitizeFn: function(content) { return content }})
 }
 
 function displayConnectionError() {