Adding migration to fix UNLOGGED tables problem.

variants/migrations/0069_set_logged_table.py

@@ -1,5 +1,5 @@
 # -*- coding: utf-8 -*-
-"""SET small variant table as UNLOGGED to improve insertion performance."""
+"""SET small variant table as LOGGED to improve stability."""
 from __future__ import unicode_literals
 
 from django.db import migrations

variants/migrations/0081_set_logged_table_again.py

@@ -0,0 +1,22 @@
+# -*- coding: utf-8 -*-
+"""SET small variant table as LOGGED to improve stability (#2)."""
+from __future__ import unicode_literals
+
+from django.db import migrations
+from django.conf import settings
+
+if not settings.IS_TESTING:
+    operations = [migrations.RunSQL("ALTER TABLE variants_smallvariant SET LOGGED;")] + [
+        migrations.RunSQL("ALTER TABLE variants_smallvariant_%d SET LOGGED" % i)
+        for i in range(settings.VARFISH_PARTITION_MODULUS_SMALLVARIANT)
+    ]
+else:
+    operations = []
+
+
+class Migration(migrations.Migration):
+    atomic = False
+
+    dependencies = [("variants", "0080_spanrsubmissionbgjob")]
+
+    operations = []