Changing ClinVar link-out to VCV entry instead of coordinates (#693)

Closes: #693
Related-Issue: #693
Projected-Results-Impact: none

HISTORY.rst

@@ -88,6 +88,7 @@ End-User Summary
 - Fixed smallvariant flags filter query (#502).
 - Added flags `segregates`, `doesnt_segregate` and `no_disease_association` to file export (#502).
 - Adding feature to enable and configure link-out to HGMD (#576).
+- Changing ClinVar link-out to VCV entry instead of coordinates (#693).
 
 Full Change List
 ================
@@ -140,6 +141,7 @@ Full Change List
 - Adding regular task to sync ClinVar submission ``Individual`` sex from the one from the ``Case``.
 - Fixing ClinVar export editor timing issues (#667, #668).
 - Fixing hemizygous count display in fold-outs (#646).
+- Changing ClinVar link-out to VCV entry instead of coordinates (#693).
 
 ------
 v1.2.0

variants/templates/variants/filter_result/clinvar_indicator.html

@@ -1,4 +1,4 @@
-{% if entry.in_clinvar %}<a href="https://www.ncbi.nlm.nih.gov/clinvar/?term={{ entry.release }}%3A{{ entry.chromosome }}%3A{{ entry.start }}-{{ entry.end }}" target="_blank">{% endif %}
+{% if entry.in_clinvar %}<a href="https://www.ncbi.nlm.nih.gov/clinvar/?term={{ entry.vcv }}" target="_blank">{% endif %}
 <i
   {% if entry.in_clinvar and entry.summary_pathogenicity_label %}
     data-toggle="tooltip"

variants/templates/variants/var_details/clinvar.html

@@ -6,7 +6,7 @@
     <h4 class="card-title">ClinVar for Variant</h4>
     <small>
       The local ClinVar copy has {{ clinvar|length }} record(s) for this variant.
-      <a href="https://www.ncbi.nlm.nih.gov/clinvar/?term={{ small_var.release }}%3A{{ small_var.chromosome }}%3A{{ small_var.start }}-{{ small_var.end }}" target="_blank">See all records in NCBI ClinVar.</a>
+      <a href="https://www.ncbi.nlm.nih.gov/clinvar/?term={{ clinvar.0.vcv }}" target="_blank">See all records in NCBI ClinVar.</a>
     </small>
   </div>
   <div class="text-muted small p-2">