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Is your feature request related to a problem? Please describe.
While performing "full" database updates is very important it is not fully documented yet. We are working on this currently for getting also GRCh38 support. However, certain databases such as the HPO and OMIM term databases should be updated more regularly.
Describe the solution you'd like
Document how to use varfish-db-downloader to download and prepare the file for import into VarFish.
Document how to import the data into VarFish. Make sure to include information how to verify that the update was correct.
Originally posted by alexejknaus July 9, 2021
In order to submit novel variants to ClinVar of novel disorder, it is necessary to provide up-to-date OMIM and HPO IDs.
How can OMIM and HPO databases in VarFish be updated?
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
While performing "full" database updates is very important it is not fully documented yet. We are working on this currently for getting also GRCh38 support. However, certain databases such as the HPO and OMIM term databases should be updated more regularly.
Describe the solution you'd like
varfish-db-downloader
to download and prepare the file for import into VarFish.Describe alternatives you've considered
N/A
Additional context
N/A
Discussed in https://github.com/bihealth/varfish-server/discussions/176
Originally posted by alexejknaus July 9, 2021
In order to submit novel variants to ClinVar of novel disorder, it is necessary to provide up-to-date OMIM and HPO IDs.
How can OMIM and HPO databases in VarFish be updated?
The text was updated successfully, but these errors were encountered: