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AttributeError: 'ProjectCasesFilter' object has no attribute 'project_or_cohort' #420

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on-premise-sentry bot opened this issue Mar 30, 2022 · 0 comments · Fixed by #422
Closed

AttributeError: 'ProjectCasesFilter' object has no attribute 'project_or_cohort' #420

on-premise-sentry bot opened this issue Mar 30, 2022 · 0 comments · Fixed by #422
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@holtgrewe
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bug Something isn't working
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athenea-1.2.0 (st...

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Sentry Issue: VARFISH-C

AttributeError: 'ProjectCasesFilter' object has no attribute 'project_or_cohort'
  File "variants/tasks.py", line 83, in project_cases_filter_task
    return submit_filter.project_cases_filter(
  File "variants/submit_filter.py", line 224, in project_cases_filter
    ProjectCasesFilter(job, job.projectcasessmallvariantquery).run()
  File "variants/submit_filter.py", line 54, in run
    self._prioritize_variant_pathogenicity(_results)
  File "variants/submit_filter.py", line 120, in _prioritize_variant_pathogenicity
    self._get_genomebuild(), patho_score, variants, self.job.bg_job.user
  File "variants/submit_filter.py", line 150, in _get_genomebuild
    for case in self.project_or_cohort.get_accessible_cases_for_user(
@holtgrewe holtgrewe added this to the athenea-1.2.0 (stable) milestone Mar 30, 2022
@holtgrewe holtgrewe added the bug Something isn't working label Mar 30, 2022
holtgrewe added a commit that referenced this issue Mar 30, 2022
@holtgrewe
Fixing issue with cohort queries (#420)
9180312 
Related-Issue: #420
Closes: #420
Projected-Results-Impact: none
@holtgrewe holtgrewe mentioned this issue Mar 30, 2022
Merged
@holtgrewe holtgrewe linked a pull request Mar 30, 2022 that will close this issue
Fixing a number of smaller issues #422
Merged
holtgrewe added a commit that referenced this issue Mar 30, 2022
@holtgrewe
Fixing issue with cohort queries (#420)
ab3b8bf 
Related-Issue: #420
Closes: #420
Projected-Results-Impact: none
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Fixing a number of smaller issues varfish-org/varfish-server
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@holtgrewe