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Fix issue with variant annotation export (#328) #329

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merged 1 commit into from Feb 2, 2022
Merged

Fix issue with variant annotation export (#328) #329

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2 changes: 2 additions & 0 deletions HISTORY.rst
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Expand Up @@ -43,6 +43,7 @@ End-User Summary
- Make clinvar UI work with many annotations (#302)
- Fixing CADD annotation (#319)
- Adding mitochondrial inheritance to case phenotype annotation (#325)
- Fix issue with variant annotation export (#328)

Full Change List
================
Expand Down Expand Up @@ -89,6 +90,7 @@ Full Change List
Dropping support for Python 3.7.
- Fixing CADD annotation (#319)
- Adding mitochondrial inheritance to case phenotype annotation (#325)
- Fix issue with variant annotation export (#328)

-------
v0.23.9
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8 changes: 6 additions & 2 deletions variants/views.py
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Expand Up @@ -1554,10 +1554,14 @@ def yield_rows(self, *, case, cases, project):
x.refseq_transcript_id for x in anno["variants"] if x.refseq_gene_id
)
hgvs = ", ".join(
x.refseq_hgvs_p or x.refseq_hgvs_c for x in anno["variants"] if x.refseq_gene_id
x.refseq_hgvs_p or x.refseq_hgvs_c
for x in anno["variants"]
if x.refseq_gene_id and (x.refseq_hgvs_p or x.refseq_hgvs_c)
)
effects = ", ".join(
"&".join(x.refseq_effect) for x in anno["variants"] if x.refseq_gene_id
"&".join(x.refseq_effect)
for x in anno["variants"]
if x.refseq_gene_id and x.refseq_effect
)

variant = anno["variants"][0]
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