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Updates to developer_installation.rst #340
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Postgres version (12) still missing.
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Postgres version (12) still missing.
Add this then please.
@@ -68,18 +68,25 @@ Clone the VarFish Server repository and switch into the checkout. | |||
Install Python Requirements | |||
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With the conda/Python environment activated, install all the requirements. | |||
Some required packages have dependencies that are usually not preinstalled. Therefore, run |
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Each sentence goes to its own line.
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done
@@ -23,7 +23,7 @@ Install Postgres | |||
Follow the instructions for your operating system to install `Postgres <https://www.postgresql.org>`_. | |||
For Ubuntu, this would be:: | |||
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sudo apt install postgresql | |||
sudo apt install postgresql-12 |
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Please rather add a note about this. Ubuntu 20 includes postgresql v12 as postgresql
package.
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Note added
Squashed commit of the following: commit 5a0ff15 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Wed Mar 9 11:14:51 2022 +0100 Documenting release cycle and branch names commit 7c50327 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Wed Mar 9 11:13:04 2022 +0100 Capping max. number of cases to query at once (varfish-org#372) (varfish-org#377) commit cc29127 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Wed Mar 9 08:41:46 2022 +0100 Fixing problem with sodar-core upgrade (varfish-org#375) (varfish-org#376) commit 034c311 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Mon Mar 7 15:52:05 2022 +0100 Optimize retrieving query IDs via API (varfish-org#371) (varfish-org#373) commit bdb49c8 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Mon Mar 7 15:40:35 2022 +0100 Fix to support sodar-core v0.10.10. commit be2ed28 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Mon Mar 7 14:41:25 2022 +0100 Improving performance for fetching result queries (varfish-org#371) (varfish-org#372) Closes: varfish-org#371 commit c0fbd74 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Mon Mar 7 11:40:52 2022 +0100 Fixing minor bug in _ClosingWrapper. commit 00ab43f Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 17:24:31 2022 +0100 Documenting Clinical Beacon v1 protocol. commit b954c1e Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 16:48:19 2022 +0100 Changing branch for badge to main commit 005f7d4 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 16:44:36 2022 +0100 Splitting UNION queries in joint mode (varfish-org#241) (varfish-org#352) commit 5e04b4d Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 16:42:18 2022 +0100 Fixing beaconsite queries with dots in the key id (varfish-org#369) (varfish-org#370) Closes: varfish-org#369 commit dc32e7e Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 16:16:01 2022 +0100 Adding REST API for small variants (varfish-org#332) (varfish-org#341) commit bb8a9c1 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Mar 4 14:46:31 2022 +0100 Fixing problem with ACMD classification (varfish-org#359) (varfish-org#368) Closes: varfish-org#359 commit fbfc86c Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri Mar 4 14:02:42 2022 +0100 Bump url-parse from 1.5.4 to 1.5.10 in /varfish/vueapp (varfish-org#365) Bumps [url-parse](https://github.com/unshiftio/url-parse) from 1.5.4 to 1.5.10. - [Release notes](https://github.com/unshiftio/url-parse/releases) - [Commits](unshiftio/url-parse@1.5.4...1.5.10) --- updated-dependencies: - dependency-name: url-parse dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> commit b06b258 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri Mar 4 14:02:36 2022 +0100 Bump follow-redirects from 1.14.7 to 1.14.8 in /varfish/vueapp (varfish-org#356) Bumps [follow-redirects](https://github.com/follow-redirects/follow-redirects) from 1.14.7 to 1.14.8. - [Release notes](https://github.com/follow-redirects/follow-redirects/releases) - [Commits](follow-redirects/follow-redirects@v1.14.7...v1.14.8) --- updated-dependencies: - dependency-name: follow-redirects dependency-type: indirect ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> commit b017ad2 Author: Svetozar N <snesic@gmail.com> Date: Fri Mar 4 14:01:57 2022 +0100 Updates to developer_installation.rst (varfish-org#340) commit 00bfc89 Author: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de> Date: Fri Feb 25 10:23:55 2022 +0100 Removing `display_hgmd_public_membership` (varfish-org#363) commit 2898ef0 Author: Oliver Stolpe <oliver.stolpe@bih-charite.de> Date: Wed Feb 23 11:30:11 2022 +0100 Extending developers documentation with topics git and running specific tests (varfish-org#362) commit 21a6e75 Author: Oliver Stolpe <oliver.stolpe@bih-charite.de> Date: Tue Feb 22 17:32:47 2022 +0100 Fixing broken case detail page that has comments on svs. (varfish-org#360)
Postgres version (12) still missing.