chore: changed org (bihealth => varfish-org) (#132)

Release-As: 0.2.1

CHANGELOG.md

@@ -1,69 +1,69 @@
 # Changelog
 
-## [0.2.0](https://github.com/bihealth/viguno/compare/v0.1.6...v0.2.0) (2023-12-27)
+## [0.2.0](https://github.com/varfish-org/viguno/compare/v0.1.6...v0.2.0) (2023-12-27)
 
 
 ### Features
 
-* improve term search with full-text index ([#109](https://github.com/bihealth/viguno/issues/109)) ([#112](https://github.com/bihealth/viguno/issues/112)) ([9751e83](https://github.com/bihealth/viguno/commit/9751e8329f6407b73e1309fe66367ebc8e539952))
+* improve term search with full-text index ([#109](https://github.com/varfish-org/viguno/issues/109)) ([#112](https://github.com/varfish-org/viguno/issues/112)) ([9751e83](https://github.com/varfish-org/viguno/commit/9751e8329f6407b73e1309fe66367ebc8e539952))
 
 
 ### Bug Fixes
 
-* make clippy happy about PartialOrd impls ([#96](https://github.com/bihealth/viguno/issues/96)) ([da19a5f](https://github.com/bihealth/viguno/commit/da19a5f122f51da83f344e3cf9857df3c5ebe5da))
+* make clippy happy about PartialOrd impls ([#96](https://github.com/varfish-org/viguno/issues/96)) ([da19a5f](https://github.com/varfish-org/viguno/commit/da19a5f122f51da83f344e3cf9857df3c5ebe5da))
 
-## [0.1.6](https://github.com/bihealth/viguno/compare/v0.1.5...v0.1.6) (2023-06-19)
+## [0.1.6](https://github.com/varfish-org/viguno/compare/v0.1.5...v0.1.6) (2023-06-19)
 
 
 ### Bug Fixes
 
-* docker build version in CI ([a3bdecf](https://github.com/bihealth/viguno/commit/a3bdecf9c0d7d37ebd08c08c62b565cd576833b4))
+* docker build version in CI ([a3bdecf](https://github.com/varfish-org/viguno/commit/a3bdecf9c0d7d37ebd08c08c62b565cd576833b4))
 
 
 ### Build System
 
-* some small fixes to CI ([#27](https://github.com/bihealth/viguno/issues/27)) ([06177e7](https://github.com/bihealth/viguno/commit/06177e7dc0fea7029adcd213b9b6a081184e9c3c))
+* some small fixes to CI ([#27](https://github.com/varfish-org/viguno/issues/27)) ([06177e7](https://github.com/varfish-org/viguno/commit/06177e7dc0fea7029adcd213b9b6a081184e9c3c))
 
-## [0.1.5](https://github.com/bihealth/viguno/compare/v0.1.4...v0.1.5) (2023-06-19)
+## [0.1.5](https://github.com/varfish-org/viguno/compare/v0.1.4...v0.1.5) (2023-06-19)
 
 
 ### Build System
 
-* fix docker builds ([#25](https://github.com/bihealth/viguno/issues/25)) ([2bede82](https://github.com/bihealth/viguno/commit/2bede822986380a3971c0cdf02fa85752565606b))
+* fix docker builds ([#25](https://github.com/varfish-org/viguno/issues/25)) ([2bede82](https://github.com/varfish-org/viguno/commit/2bede822986380a3971c0cdf02fa85752565606b))
 
-### [0.1.4](https://www.github.com/bihealth/viguno/compare/v0.1.3...v0.1.4) (2023-06-17)
+### [0.1.4](https://www.github.com/varfish-org/viguno/compare/v0.1.3...v0.1.4) (2023-06-17)
 
 
 ### Build System
 
-* adjust Docker builds for PRs and branches ([#23](https://www.github.com/bihealth/viguno/issues/23)) ([f4de844](https://www.github.com/bihealth/viguno/commit/f4de844a14865573de303319d43e4e095fb7bdaf))
+* adjust Docker builds for PRs and branches ([#23](https://www.github.com/varfish-org/viguno/issues/23)) ([f4de844](https://www.github.com/varfish-org/viguno/commit/f4de844a14865573de303319d43e4e095fb7bdaf))
 
-### [0.1.3](https://www.github.com/bihealth/viguno/compare/v0.1.2...v0.1.3) (2023-06-16)
+### [0.1.3](https://www.github.com/varfish-org/viguno/compare/v0.1.2...v0.1.3) (2023-06-16)
 
 
 ### Miscellaneous Chores
 
-* re-release as v0.1.3 ([81257d8](https://www.github.com/bihealth/viguno/commit/81257d8633686eac1d67d7d100ec12acd3d2636a))
+* re-release as v0.1.3 ([81257d8](https://www.github.com/varfish-org/viguno/commit/81257d8633686eac1d67d7d100ec12acd3d2636a))
 
-### [0.1.2](https://www.github.com/bihealth/viguno/compare/v0.1.1...v0.1.2) (2023-06-13)
+### [0.1.2](https://www.github.com/varfish-org/viguno/compare/v0.1.1...v0.1.2) (2023-06-13)
 
 
 ### Bug Fixes
 
-* make /hpo/genes endpoint return HGNC ID ([#16](https://www.github.com/bihealth/viguno/issues/16)) ([#17](https://www.github.com/bihealth/viguno/issues/17)) ([77bd9af](https://www.github.com/bihealth/viguno/commit/77bd9af0cc498183d6c1172eebc7a3a08fcf3ebb))
+* make /hpo/genes endpoint return HGNC ID ([#16](https://www.github.com/varfish-org/viguno/issues/16)) ([#17](https://www.github.com/varfish-org/viguno/issues/17)) ([77bd9af](https://www.github.com/varfish-org/viguno/commit/77bd9af0cc498183d6c1172eebc7a3a08fcf3ebb))
 
-### [0.1.1](https://www.github.com/bihealth/viguno/compare/v0.1.0...v0.1.1) (2023-06-11)
+### [0.1.1](https://www.github.com/varfish-org/viguno/compare/v0.1.0...v0.1.1) (2023-06-11)
 
 
 ### Build System
 
-* provide Docker images from GitHub releases ([#6](https://www.github.com/bihealth/viguno/issues/6)) ([#13](https://www.github.com/bihealth/viguno/issues/13)) ([5df9de5](https://www.github.com/bihealth/viguno/commit/5df9de59ff3734896279003be7ff0a10fa86ae5a))
+* provide Docker images from GitHub releases ([#6](https://www.github.com/varfish-org/viguno/issues/6)) ([#13](https://www.github.com/varfish-org/viguno/issues/13)) ([5df9de5](https://www.github.com/varfish-org/viguno/commit/5df9de59ff3734896279003be7ff0a10fa86ae5a))
 
 ## 0.1.0 (2023-06-11)
 
 
 ### Features
 
-* expose similarity function of hpo crate ([#7](https://www.github.com/bihealth/viguno/issues/7)) ([#9](https://www.github.com/bihealth/viguno/issues/9)) ([e573957](https://www.github.com/bihealth/viguno/commit/e57395713cdb8652b4ff945e40ca9a9142349a85))
-* port over code from worker ([#1](https://www.github.com/bihealth/viguno/issues/1)) ([#2](https://www.github.com/bihealth/viguno/issues/2)) ([feaefc1](https://www.github.com/bihealth/viguno/commit/feaefc11f0aa9c8732f593c6a85460c5267b7d61))
-* use/provide HGNC gene IDs ([#10](https://www.github.com/bihealth/viguno/issues/10)) ([#11](https://www.github.com/bihealth/viguno/issues/11)) ([0a1da92](https://www.github.com/bihealth/viguno/commit/0a1da923d3601d25d36dc000fe39af24eb1960c3))
+* expose similarity function of hpo crate ([#7](https://www.github.com/varfish-org/viguno/issues/7)) ([#9](https://www.github.com/varfish-org/viguno/issues/9)) ([e573957](https://www.github.com/varfish-org/viguno/commit/e57395713cdb8652b4ff945e40ca9a9142349a85))
+* port over code from worker ([#1](https://www.github.com/varfish-org/viguno/issues/1)) ([#2](https://www.github.com/varfish-org/viguno/issues/2)) ([feaefc1](https://www.github.com/varfish-org/viguno/commit/feaefc11f0aa9c8732f593c6a85460c5267b7d61))
+* use/provide HGNC gene IDs ([#10](https://www.github.com/varfish-org/viguno/issues/10)) ([#11](https://www.github.com/varfish-org/viguno/issues/11)) ([0a1da92](https://www.github.com/varfish-org/viguno/commit/0a1da923d3601d25d36dc000fe39af24eb1960c3))

Cargo.toml

@@ -5,7 +5,7 @@ edition = "2021"
 authors = ["Manuel Holtgrewe <manuel.holtgrewe@bih-charite.de>"]
 description = "Rust template repository"
 license = "Apache-2.0"
-homepage = "https://github.com/bihealth/viguno"
+homepage = "https://github.com/varfish-org/viguno"
 readme = "README.md"
 
 [dependencies]

README.md

@@ -1,12 +1,12 @@
 [![Crates.io](https://img.shields.io/crates/d/viguno.svg)](https://crates.io/crates/viguno)
 [![Crates.io](https://img.shields.io/crates/v/viguno.svg)](https://crates.io/crates/viguno)
 [![Crates.io](https://img.shields.io/crates/l/viguno.svg)](https://crates.io/crates/viguno)
-[![CI](https://github.com/bihealth/viguno/actions/workflows/rust.yml/badge.svg)](https://github.com/bihealth/viguno/actions/workflows/rust.yml)
-[![codecov](https://codecov.io/gh/bihealth/viguno/branch/main/graph/badge.svg?token=aZchhLWdzt)](https://codecov.io/gh/bihealth/viguno)
+[![CI](https://github.com/varfish-org/viguno/actions/workflows/rust.yml/badge.svg)](https://github.com/varfish-org/viguno/actions/workflows/rust.yml)
+[![codecov](https://codecov.io/gh/varfish-org/viguno/branch/main/graph/badge.svg?token=aZchhLWdzt)](https://codecov.io/gh/varfish-org/viguno)
 
 # Viguno
 
-<img src="https://raw.githubusercontent.com/bihealth/viguno/main/utils/vicuna-wrangling-ontology-and-genes.png" width="256px" height="256px" align="right">
+<img src="https://raw.githubusercontent.com/varfish-org/viguno/main/utils/vicuna-wrangling-ontology-and-genes.png" width="256px" height="256px" align="right">
 
 Viguno (Versatile Interface for Genetics Utilization of Nice Ontologies) is the component of a VarFish installation that provides information on HPO phenotypes, diseases, and their relation to genes.
 
@@ -23,7 +23,7 @@ We bind-mount this into the container with `-v $PWD/tests/data:/data`.
 ```
 # docker run \
     -v $PWD/tests/data:/data \
-    -it ghcr.io/bihealth/viguno:0.1.1
+    -it ghcr.io/varfish-org/viguno:0.1.1
 ```
 
 ## Preparing Data

utils/docker/Dockerfile

@@ -5,7 +5,7 @@
 # We don't do cross compilation at the moment but build the dependencies first
 # anyway to get the ability to increment.
 #
-# cf. https://github.com/bihealth/viguno/issues/6#issuecomment-1586216139
+# cf. https://github.com/varfish-org/viguno/issues/6#issuecomment-1586216139
 
 # ---------------------------------------------------------------------------
 # Builder

utils/docker/build-docker.sh

@@ -11,7 +11,7 @@ GIT_DESCRIBE=$(git describe --tags | cut -d - -f 1)
 GIT_TAG=${GIT_TAG-$GIT_DESCRIBE}
 DOCKER_VERSION=$(echo $GIT_TAG | sed -e 's/^v//')
 
-ORG=bihealth
+ORG=varfish-org
 REPO=viguno
 
 GIT_DEPTH=$(($(git rev-list HEAD ^$(git describe --abbrev=0 --tags) --count) + 1))