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VARI BBC

Van Andel Institute Bioinformatics and Biostatistics Core

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  1. rnaseq_workflow rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    Python 8 17

  2. Biscuit_Snakemake_Workflow Biscuit_Snakemake_Workflow Public archive

    Snakemake Workflow For WGBS Data

    Python 3 11

  3. RNA-Seq-Analysis RNA-Seq-Analysis Public

    Automated RNA-Seq Analysis

    2

  4. scRNAseq scRNAseq Public

    Python 2

  5. piwi_RNA_pipeline piwi_RNA_pipeline Public

    Scripts for heirarchical assignment of reads to feature biotypes

    Perl 1

  6. GROseq_scripts GROseq_scripts Public

    Shell 1

Repositories

Showing 10 of 26 repositories
  • rnaseq_workflow Public

    snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

    vari-bbc/rnaseq_workflow’s past year of commit activity
    Python 8 GPL-3.0 17 0 2 Updated Jul 22, 2024
  • prep_bbc_shared Public

    Pipeline for preparing shared resources such as aligner index files in the BBC.

    vari-bbc/prep_bbc_shared’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 28, 2024
  • KOBOLD_Scripts Public

    Proteomics analysis scripts for KOBOLD including GSEAs

    vari-bbc/KOBOLD_Scripts’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Jun 20, 2024
  • scRNAseq Public
    vari-bbc/scRNAseq’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated May 11, 2024
  • Fly_Analysis Public
    vari-bbc/Fly_Analysis’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated May 9, 2024
  • rnaseq_w_umis Public
    vari-bbc/rnaseq_w_umis’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 22, 2024
  • RCR_central_tenets Public

    This repo was built to house all materials for the RCR course on statistics. Slides: https://www.menti.com/aldbupw35t27. Shiny link: https://vai-bbc.shinyapps.io/RCR_Slides_20240417/

    vari-bbc/RCR_central_tenets’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Apr 17, 2024
  • demultiplex Public
    vari-bbc/demultiplex’s past year of commit activity
    Shell 0 GPL-3.0 1 4 0 Updated Apr 10, 2024
  • Drosophilia_Single_Embryo_Workflow Public

    Workflow accompanying manuscript titled: Single-embryo metabolomics reveals developmental metabolism in the early Drosophila embryo

    vari-bbc/Drosophilia_Single_Embryo_Workflow’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Apr 3, 2024
  • Peaks_workflow Public
    vari-bbc/Peaks_workflow’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Dec 12, 2023
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