add rpf [a subset of nmr-star] shift list support

varioustoxins · Mar 22, 2023 · b402f8e · b402f8e
1 parent e3c84da
commit b402f8e
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diff --git a/src/nef_pipelines/main.py b/src/nef_pipelines/main.py
@@ -86,6 +86,7 @@ def main():
         import nef_pipelines.transcoders.nmrview  # noqa: F401
         import nef_pipelines.transcoders.pales  # noqa: F401
         import nef_pipelines.transcoders.pdbx  # noqa: F401
+        import nef_pipelines.transcoders.rpf  # noqa: F401
         import nef_pipelines.transcoders.shifty  # noqa: F401
         import nef_pipelines.transcoders.sparky  # noqa: F401
         import nef_pipelines.transcoders.xcamshift  # noqa: F401

diff --git a/src/nef_pipelines/transcoders/rpf/__init__.py b/src/nef_pipelines/transcoders/rpf/__init__.py
@@ -0,0 +1,19 @@
+import typer
+
+from nef_pipelines import nef_app
+
+app = typer.Typer()
+# import_app = typer.Typer()
+export_app = typer.Typer()
+
+if nef_app.app:
+
+    nef_app.app.add_typer(app, name="rpf", help="-  write rpf shifts")
+
+    # app.add_typer(import_app, name="import", help="- import fasta sequences")
+    app.add_typer(export_app, name="export", help="- export rpf shifts")
+
+    # import of specific importers must be after app creation to avoid circular imports
+    import nef_pipelines.transcoders.nmr_star.exporters.shifts  # noqa: F401
+
+    # import nef_pipelines.transcoders.fasta.importers.sequence  # noqa: F401
diff --git a/src/nef_pipelines/transcoders/rpf/exporters/__init__.py b/src/nef_pipelines/transcoders/rpf/exporters/__init__.py