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fix: fix decompression of CRAM files that rely on an external reference FASTA. Varlociraptor now uses the given reference FASTA for this decompression #420

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merged 1 commit into from
Mar 26, 2024

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Fixes #416.

Description

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation at https://github.com/varlociraptor/varlociraptor.github.io is updated in a separate PR to reflect the changes or this is not necessary (e.g. if the change does neither modify the calling grammar nor the behavior or functionalities of Varlociraptor).

…ce FASTA. Varlociraptor now uses the given reference FASTA for this decompression
@johanneskoester johanneskoester merged commit 75810c6 into master Mar 26, 2024
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@johanneskoester johanneskoester deleted the fix/cram-decompress branch March 26, 2024 09:38
johanneskoester pushed a commit that referenced this pull request Mar 27, 2024
🤖 I have created a release *beep* *boop*
---


##
[8.4.6](v8.4.5...v8.4.6)
(2024-03-27)


### Bug Fixes

* fix bug during calculation of read position bias
([#422](#422))
([33d98b6](33d98b6))
* fix decompression of CRAM files that rely on an external reference
FASTA. Varlociraptor now uses the given reference FASTA for this
decompression
([#420](#420))
([75810c6](75810c6))

---
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Varlociraptor Preprocess Variants on CRAM
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