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  1. tcrconnect tcrconnect Public

    tcrconnect is a tool to a) quantify the overlap metrics between TCR sequences from single cell RNAseq data and/or bulk TCR seq data and b) to calculate metrics associated to antigen specificity thr…

    Python

  2. treatmentopt treatmentopt Public

    MATLAB

  3. scimmunity scimmunity Public

    scimmunity is a python tool for analyzing single-cell RNAseq data specifically for immune and cancer cells. It includes preprocessing, dimension reduction, clustering, annotation, visualization, di…

    Python 2

  4. fitnesslandscape fitnesslandscape Public