Bio2RDF website

RDF browser for Bio2RDF written in TypeScript, using React, deployed to GitHub Pages.

See the documentation of the Bio2RDF project for more details: https://github.com/bio2rdf/bio2rdf-scripts/wiki

👨‍💻 Contribute

Contributions are welcome! See the guidelines to contribute.

🏗️ Run in development

Requirements: npm and yarn installed.

Clone the repository:

git clone https://github.com/vemonet/bio2rdf-website
cd bio2rdf-website

Install dependencies 📥

yarn

Run the web app in development at http://localhost:19006

yarn dev

The website should reload automatically at each changes to the code 🔃

Upgrade the packages versions in yarn.lock

yarn upgrade perfect-graph unitx-ui unitx

🛩️ Run in production

This website is automatically deployed by a GitHub Actions worklow to GitHub Pages at https://vemonet.github.io/bio2rdf-website

You can build locally in /web-build folder and serve on http://localhost:5000 📦

yarn build
yarn serve

Or run directly using Docker 🐳 (requires docker installed)

docker-compose up

Checkout the docker-compose.yml file to see how we run the Docker image.

🔎 Virtuoso search query

Optimized SPARQL query to perform full text search in Virtuoso after building the index:

SELECT ?foundUri ?foundLabel WHERE {?foundUri <http://www.w3.org/2000/01/rdf-schema#label> ?foundLabel . ?foundLabel bif:contains '$TEXT_TO_SEARCH' . } LIMIT 200