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    <h1>Get the tips belonging to a regime in a tree</h1>
    
    <div class="hidden name"><code>PCMTreeGetTipsInRegime.Rd</code></div>
    </div>

    <div class="ref-description">
    <p>Get the tips belonging to a regime in a tree</p>
    </div>

    <pre class="usage"><span class='fu'>PCMTreeGetTipsInRegime</span>(<span class='no'>tree</span>, <span class='no'>regime</span>)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <table class="ref-arguments">
    <colgroup><col class="name" /><col class="desc" /></colgroup>
    <tr>
      <th>tree</th>
      <td><p>a phylo object with an edge.regime member or a PCMTree object</p></td>
    </tr>
    <tr>
      <th>regime</th>
      <td><p>a character or integer denoting a regime in the tree.</p></td>
    </tr>
    </table>

    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>

    <p>an integer vector with the ids of the tips belonging to regime.</p>
    <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>

    <div class='dont-index'><p><a href='PCMTreeGetTipsInPart.html'>PCMTreeGetTipsInPart</a>, <a href='PCMTreeGetPartNames.html'>PCMTreeGetPartNames</a>, <a href='PCMRegimes.html'>PCMRegimes</a>, <a href='PCMTreeGetPartRegimes.html'>PCMTreeGetPartRegimes</a>, <a href='PCMTreeSetPartRegimes.html'>PCMTreeSetPartRegimes</a>, <a href='PCMTreeGetPartition.html'>PCMTreeGetPartition</a></p></div>

    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
    <pre class="examples"><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/Random.html'>set.seed</a></span>(<span class='fl'>1</span>, <span class='kw'>kind</span> <span class='kw'>=</span> <span class='st'>"Mersenne-Twister"</span>, <span class='kw'>normal.kind</span> <span class='kw'>=</span> <span class='st'>"Inversion"</span>)
<span class='no'>tree</span> <span class='kw'>&lt;-</span> <span class='kw pkg'>ape</span><span class='kw ns'>::</span><span class='fu'><a href='https://rdrr.io/pkg/ape/man/rtree.html'>rtree</a></span>(<span class='fl'>10</span>)
<span class='no'>regimes</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://rdrr.io/r/base/sample.html'>sample</a></span>(<span class='no'>letters</span>[<span class='fl'>1</span>:<span class='fl'>3</span>], <span class='fu'><a href='https://rdrr.io/r/base/nrow.html'>nrow</a></span>(<span class='no'>tree</span>$<span class='no'>edge</span>), <span class='kw'>replace</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='PCMTreeSetRegimesForEdges.html'>PCMTreeSetRegimesForEdges</a></span>(<span class='no'>tree</span>, <span class='no'>regimes</span>)
<span class='co'># \donttest{</span>
<span class='fu'><a href='PCMTreePlot.html'>PCMTreePlot</a></span>(<span class='no'>tree</span>) + <span class='kw pkg'>ggtree</span><span class='kw ns'>::</span><span class='fu'><a href='https://rdrr.io/pkg/ggtree/man/geom_nodelab.html'>geom_nodelab</a></span>() + <span class='kw pkg'>ggtree</span><span class='kw ns'>::</span><span class='fu'><a href='https://rdrr.io/pkg/ggtree/man/geom_tiplab.html'>geom_tiplab</a></span>()</div><div class='img'><img src='PCMTreeGetTipsInRegime-1.png' alt='' width='700' height='433' /></div><div class='input'><span class='co'># }</span>
<span class='no'>regime</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='PCMRegimes.html'>PCMRegimes</a></span>(<span class='no'>tree</span>)[<span class='fl'>1</span>]
<span class='fu'>PCMTreeGetTipsInRegime</span>(<span class='no'>tree</span>, <span class='no'>regime</span>)</div><div class='output co'>#&gt; [1] 2 8 9</div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>regime</span>)</div><div class='output co'>#&gt; [1] "c"</div><div class='input'>
</div></pre>
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    <h2>Contents</h2>
    <ul class="nav nav-pills nav-stacked">
      <li><a href="#arguments">Arguments</a></li>
      <li><a href="#value">Value</a></li>
      <li><a href="#see-also">See also</a></li>
      <li><a href="#examples">Examples</a></li>
    </ul>

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