Simulations_penalizedclr

Files for reproducing simulation study for article: penalizedclr: an R package for penalized conditional logistic regression for integration of multiple omics layers

This repository contains the following files:

1. simulation_study_setup_and_run.R that contains functions that generate data, simulation settings and a function that runs simulations
2. simulation_results.rds that contains intermediate simulation results
3. Tables_Figures.R that provides the code for results presentation

In addition, code for estimating alternative high-dimensional logistic regression models is provided in

4. ipf-lasso-simulations.R

5. clogitL1.R

Code for running a simulation study for different sample sizes is given in

7. Different_n.R