I am Ábel Vértesy, a postdoc in the Knoblich Lab at IMBA - Institute for Molecular Biotechnology of the Austrian Academy of Sciences in Vienna. I did my PhD in Alexander van Oudenaarden's lab @ the Hubrecht Institute, in Utrecht, The Netherlands. I currently focus on various single-cell projects in brain organoids. During my PhD, I was focusing on data analysis in different single-cell genomics and spatial transcriptomics projects.
This is my personal website summarizing some of my activities.
My papers are listed on ORCID, on Google Scholar and on Pubmed.
Preprints of my manuscripts are accessible on biorxiv, or accesible on request.
I designed and held two summer courses in the July-Aug/2018 in Accra, at the University of Ghana.
- Single-cell genomics (1 cours, coming in Aug!)
- Exploratory-data-analysis-in-R (2 courses)
During my work I also wrote two R-packages and some other function libraries:
- MarkdownReports, an R function library to create scientific figures and reports easily.
- CodeAndRoll, a utility function library for R.
- Seurat.utils, various utility functions for single-cell analysis with Seurat v3.
- Seurat.multicore, multicore and utility functions for Seurat 2 & 3, using doMC / foreach packages.
- DatabaseLinker, functions for easier lookup of genes & proteins in various databases via your browser
- RoxygenReady to prepare your R function library to be compiled by Roxygen into an R package.
- DataInCode to store (smaller) data objects in your R code - make your script fully reproducable yet easily sharable.
