OPTIMA v.f-1.3 -- October 6, 2015
Copyright (C) Davide Verzotto and Niranjan Nagarajan
http://www.davideverzotto.it/research/OPTIMA/
OPTIMA: Sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis
Index-based map-to-sequence alignment in large eukaryotic genomes
-- For questions and suggestions about the project, please contact Davide Verzotto (d.verzotto@gmail.com) or Niranjan Nagarajan (nagarajann@gis.a-star.edu.sg).
-- This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License 2.1 as published by the Free Software Foundation.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License 2.1 along with this library; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
-- Please cite the following papers:
Davide Verzotto, Audrey S.M. Teo, Axel M. Hillmer, Niranjan Nagarajan: ``OPTIMA: Sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis." Submitted to GigaScience 2015.
Davide Verzotto, Audrey S.M. Teo, Axel M. Hillmer, Niranjan Nagarajan: ``Index-based map-to-sequence alignment in large eukaryotic genomes." In the Proceedings of the Fifth RECOMB Satellite Workshop on Massively Parallel Sequencing, RECOMB-Seq 2015, Warsaw (Poland).