Feature config (#69)

* add build to ci pages

* add coming soon template to a new file

* plot and query configuration

.github/workflows/ci.yml

@@ -48,5 +48,5 @@ jobs:
         with:
           python-version: 3.x
       - run: pip install mkdocs-material mkdocstrings[python]
-      #- run: mkdocs build
+      - run: mkdocs build
       - run: mkdocs gh-deploy --force

docs/coming_soon.md

@@ -0,0 +1,8 @@
+# Coming Soon
+
+We’re working hard to make this page available by the end of June! 
+
+Until then we look forward to your questions and feedbacks using the [Discussions](https://github.com/vestalisvirginis/synphage/discussions) or the [Issues](https://github.com/vestalisvirginis/synphage/issues) pages.  
+Please follow the [How to contribute?](https://github.com/vestalisvirginis/synphage/blob/main/CONTRIBUTING.md) guidelines for any contribution to this project!
+
+We are looking forward to hearing from you!

docs/configurations.md

@@ -1,8 +1,39 @@
-# Coming Soon
+# Configurations
 
-We’re working hard to make this page available by the end of June! 
+Using Dagster to run synphage pipeline allows the user to easily configure the jobs at run-time. 
 
-Until then we look forward to your questions and feedbacks using the [Discussions](https://github.com/vestalisvirginis/synphage/discussions) or the [Issues](https://github.com/vestalisvirginis/synphage/issues) pages.  
-Please follow the [How to contribute?](https://github.com/vestalisvirginis/synphage/blob/main/CONTRIBUTING.md) guidelines for any contribution to this project!
 
-We are looking forward to hearing from you!
+## Plotting config options  
+
+To change the plot configations, open the dropdown menu at the right of the `Materialize all` black button. Then go to `Open launchpad`. This will open a pop-up window with the configurations.
+
+List of the supported configurations:
+
+1. Genome selection
+
+    Field Name | Description | Default Value  
+    ------- | ----------- | ----  
+    `sequence_file` | File containing the plot instruction | sequences.csv  
+
+2. Graphic
+
+    Field Name | Description | Default Value
+    ------- | ----------- | ----
+    `title` | Generated plot file title | synteny_plot
+    `colours` | Gene identity colour bar | ["#fde725", "#90d743", "#35b779", "#21918c", "#31688e", "#443983", "#440154"] 
+    `gradient` | Nucleotide identity colour bar | #B22222
+    `graph_shape` | Linear or circular representation | linear
+    `graph_pagesize` | Output document format | A4
+    `graph_fragments` | Number of fragments | 1
+    `graph_start` | Sequence start | 1
+    `graph_end` | Sequence end | length of the longest genome  
+
+
+## Query config options  
+
+To change the query configations, open the dropdown menu at the right of the `Materialize all` black button. Then go to `Open launchpad`. This will open a pop-up window with the configurations.
+
+Field Name | Description | Default Value
+ ------- | ----------- | ----
+`search_key` | Keyword(s) for NCBI query | Myoalterovirus
+`database` | Database identifier | nuccore