Skip to content

vg-lab/nsol

master
Switch branches/tags

Name already in use

A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

build status coverage report

NSOL - Neuroscience Objects Library

(c) 2015. GMRV / VGLAB / URJC

www.gmrv.es www.vglab.es gmrv@gmrv.es

Introduction

nsol is a library that provides data structures to handle basic neuroscientific data, mainly cortex morphologies and structures as Spine, Soma, Neuron, Column, etc... It also provides some readers and writers to load and store dataset in swc (as used by NeuroMorpho) and XML file formats.
It also reads circuits and morphologies using Brion, which is an optional dependency.
It is used in projects as NeuroScheme, ViSimpl and NeuroLOTs

Dependencies

  • Required dependencies:
    • Eigen3 (*1)
  • Optional dependencies:
    • FiReS (*2)
    • Brion (*2)
    • Boost's Unit Test Framework
    • Qt5Core

(*1) Install linux package libeigen3-dev or download sources from http://eigen.tuxfamily.org/
(*2) This dependencies can be built uncommenting theirs corresponding line in the file .gitsubprojects

Building

nsol has been successfully built and used on Ubuntu 17.04/16.04, Mac OSX Yosemite/Capitan/Sierra and Windows 7/8/10 (Visual Studio 2015 Win64). The following steps should be enough to build it under linux/Mac OSX:

git clone --recursive https://github.com/vg-lab/nsol
mkdir nsol/build && cd nsol/build
cmake .. -DCMAKE_BUILD_TYPE=Release -DCLONE_SUBPROJECTS=ON
make

Testing

After building NSOL, you can run some examples in bin directory. For example, to manually run a simple test that parses an input .swc file and dumps some statistics about it, use the command:

./bin/nsolScene testData/scene.xml

Documentation

You can access the online API documentation generated from the source (using Doxygen ) in https://vg-lab.github.io/doc/nsol/

About

NeuroScience Objects Library

Resources

License

Stars

Watchers

Forks

Packages

No packages published