You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
output:
Crash report for vg v1.49.0 "Peschici"
Stack trace (most recent call last): #13 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x615534, in _start #12 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x2056606, in __libc_start_main #11 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x2054da9, in __libc_start_call_main #10 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdf08ab, in vg::subcommand::Subcommand::operator()(int, char**) const #9 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdc1be2, in main_rna(int, char**) #8 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdbf4d2, in std::__cxx11::basic_string<char, std::char_traits, std::allocator >::basic_string(char const*, std::allocator const&) [clone .constprop.0] #7 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e380b, in std::__throw_logic_error(char const*) #6 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8ea98, in __cxa_throw #5 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8e936, in std::terminate() #4 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8e8cb, in __cxxabiv1::__terminate(void (*)()) #3 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e1c83, in __gnu_cxx::__verbose_terminate_handler() [clone .cold] #2 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e43cb, in abort #1 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x206d7e5, in raise
#0 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x209a1ec, in __pthread_kill
1. What were you trying to do?
2. What did you want to happen?
3. What actually happened?
4. If you got a line like Stack trace path: /somewhere/on/your/computer/stacktrace.txt, please copy-paste the contents of that file here:
Place stacktrace here.
5. What data and command can the vg dev team use to make the problem happen?
6. What does running vg version say?
Place vg version output here
The text was updated successfully, but these errors were encountered:
my code :
vg rna -p --threads 20 --transcripts /data/yxzhu/Oaks/Ref_genome/Ref_genome/Quercus_variabilis/Quercus_variabilis_onlychr_rename_converted.gff3 --use-hap-ref --gbz-format --write-gbwt Quercus9-pg_pantranscriptome.gbwt --write-info Quercus9-pg_pantranscriptome.txt /data/yxzhu/Oaks/pangenome/Quercus9pangenome/Quercus9-pg.gbz
output:
Crash report for vg v1.49.0 "Peschici"
Stack trace (most recent call last):
#13 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x615534, in _start
#12 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x2056606, in __libc_start_main
#11 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x2054da9, in __libc_start_call_main
#10 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdf08ab, in vg::subcommand::Subcommand::operator()(int, char**) const
#9 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdc1be2, in main_rna(int, char**)
#8 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0xdbf4d2, in std::__cxx11::basic_string<char, std::char_traits, std::allocator >::basic_string(char const*, std::allocator const&) [clone .constprop.0]
#7 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e380b, in std::__throw_logic_error(char const*)
#6 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8ea98, in __cxa_throw
#5 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8e936, in std::terminate()
#4 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x1f8e8cb, in __cxxabiv1::__terminate(void (*)())
#3 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e1c83, in __gnu_cxx::__verbose_terminate_handler() [clone .cold]
#2 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x5e43cb, in abort
#1 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x206d7e5, in raise
#0 Object "/data/zhangmm/zyx_RNAseq/software/cactus-bin-v2.6.4/bin/vg", at 0x209a1ec, in __pthread_kill
1. What were you trying to do?
2. What did you want to happen?
3. What actually happened?
4. If you got a line like
Stack trace path: /somewhere/on/your/computer/stacktrace.txt
, please copy-paste the contents of that file here:5. What data and command can the vg dev team use to make the problem happen?
6. What does running
vg version
say?The text was updated successfully, but these errors were encountered: