NGSeq_Quality_Visualization

1. Make sure you have Java and Python installed.
2. Clone this repository to your desired location.
3. Make scripts executable with chmod +x ./setup.sh && chmod +x ./run.sh
4. Run setup.sh first to download all needed tools and setup directory structures. You only need to run it once.
5. Afterwards, run run.sh for the actual pipeline. You need to provide --input for the raw fastq.gz data.
6. Find the analyses of your data at 127.0.0.1:8000 or localhost:8000