GitHub - vicruiser/3Dmapper: Map genetic variants and protein positions to protein interfaces in 3D

Overview

3Dmapper is a command line tool based on R and Python programming languages that maps annotated genomic variants or positions to protein structures.

BLAST standalone software version >= 2.6. Follow these instructions to download and use the command line tool.
Python > 3.6
R version > 3.5
GNU parallel

Execute the following code in Terminal:

git clone https://github.com/vicruiser/3Dmapper.git
cd 3Dmapper
pip install . 
sh r_dependencies.sh

To learn how to use 3Dmapper, please refer to our Wiki.

Name		Name	Last commit message	Last commit date
Latest commit History 382 Commits
docs		docs
example		example
makechimera		makechimera
makeinterfacedb		makeinterfacedb
makevariantsdb		makevariantsdb
mapper		mapper
.gitignore		.gitignore
.travis.yml		.travis.yml
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.html		README.html
README.md		README.md
_config.yml		_config.yml
dependencies.txt		dependencies.txt
r_dependencies.sh		r_dependencies.sh
setup.cfg		setup.cfg
setup.py		setup.py