added DiagrammeR to the list of suggest due to vignette use

victor-navarro · Mar 19, 2024 · a7e82a8 · a7e82a8
1 parent cb50049
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Showing 5 changed files with 10 additions and 5 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -11,3 +11,4 @@
 ^revdep$
 ^cran-comments\.md$
 ^CRAN-SUBMISSION$
+^Dockerfile
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -28,7 +28,8 @@ Suggests:
     knitr,
     rmarkdown,
     spelling,
-    testthat (>= 3.0.0)
+    testthat (>= 3.0.0),
+    DiagrammeR
 VignetteBuilder: 
     knitr
 Config/testthat/edition: 3

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -15,7 +15,7 @@ articles:
   RW1972: RW1972.html
   SM2007: SM2007.html
   using_time_models: using_time_models.html
-last_built: 2024-03-19T15:36Z
+last_built: 2024-03-19T15:55Z
 urls:
   reference: https://victornavarro.org/calmr/reference
   article: https://victornavarro.org/calmr/articles

diff --git a/docs/search.json b/docs/search.json
diff --git a/vignettes/ANCCR.Rmd b/vignettes/ANCCR.Rmd
@@ -161,11 +161,13 @@ which can then be mapped onto probabilities via a softmax function^[The implemen
 
 #### A diagram
 
-The diagram below shows the dependencies in the model. I am excluding the indicator functions and parameters for simplicity.
+The diagram below shows the dependencies in the model. I am excluding the indicator functions and parameters for 
+simplicity.^[If nothing appears below, try rebuilding this vignette after install `DiagrammeR`]
 
 
 ```{r echo = FALSE, message=FALSE}
-DiagrammeR::mermaid("graph LR;
+if (requireNamespace("DiagrammeR", quietly = TRUE)) {
+    DiagrammeR::mermaid("graph LR;
     E_i-->M_i;
     E_j-->M_j;
     M_j-->SRC;
@@ -183,6 +185,7 @@ DiagrammeR::mermaid("graph LR;
     CW-->Q;
     SRC-->Q;
 ", width = "100%")
+}
 ```
 
 #### Note