Rename from orderly to orderly1 #559
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on: | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
repository_dispatch: | |
types: [orderly-downstream] | |
name: test-coverage | |
jobs: | |
test-coverage: | |
runs-on: ubuntu-20.04 | |
services: | |
redis: | |
image: redis | |
# Set health checks to wait until redis has started | |
options: >- | |
--health-cmd "redis-cli ping" | |
--health-interval 10s | |
--health-timeout 5s | |
--health-retries 5 | |
ports: | |
# Maps port 6379 on service container to the host | |
- 6379:6379 | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v2 | |
- uses: r-lib/actions/setup-r@v1 | |
- uses: r-lib/actions/setup-pandoc@v1 | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
run: | | |
while read -r cmd | |
do | |
eval sudo $cmd | |
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
sudo apt-get install libsodium-dev | |
- name: Install dependencies | |
run: | | |
install.packages(c("remotes")) | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_github("mrc-ide/rrq") | |
remotes::install_github("ropensci/jsonvalidate") | |
remotes::install_cran("covr") | |
shell: Rscript {0} | |
- name: Test coverage | |
run: covr::codecov() | |
shell: Rscript {0} |