Merge pull request #34 from vinisalazar/dev

Patch v0.1.18
vinisalazar · Nov 7, 2020 · e2121c3 · e2121c3
2 parents d16aa7e + 70c2d88
commit e2121c3
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,9 @@
     * .describe []
     * .write_paths_to_file, .copy_files_to_dir(), .link_files_to_dir()
 
+### v0.1.18a
+* Patch file deserializer bug [x]
+
 ### v0.1.18
 * Add support for ProvStore API (#23) [x]
 * Add subparsers for CLI commands [x]

diff --git a/bioprov/__init__.py b/bioprov/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/bioprov b/bioprov/bioprov
@@ -3,7 +3,7 @@ __author__ = "Vini Salazar"
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 Executable that goes in $PATH. Code for the command-line is on the bioprov.py module.

diff --git a/bioprov/bioprov.py b/bioprov/bioprov.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 BioProv command-line application. This module holds the main executable.

diff --git a/bioprov/data/__init__.py b/bioprov/data/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/programs/__init__.py b/bioprov/programs/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 from .programs import prodigal, diamond, blastn, blastp, prokka, kaiju, kaiju2table
diff --git a/bioprov/programs/programs.py b/bioprov/programs/programs.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/src/__init__.py b/bioprov/src/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/src/config.py b/bioprov/src/config.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/src/files.py b/bioprov/src/files.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """
@@ -489,5 +489,5 @@ def deserialize_files_dict(files_dict):
                     try:
                         setattr(files_dict[tag], attr_, value_)
                     except AttributeError:
-                        breakpoint()
+                        pass
     return files_dict
diff --git a/bioprov/src/main.py b/bioprov/src/main.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 

diff --git a/bioprov/src/prov.py b/bioprov/src/prov.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 Module containing base provenance attributes.

diff --git a/bioprov/src/workflow.py b/bioprov/src/workflow.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 Contains the Workflow class and related functions.

diff --git a/bioprov/tests/__init__.py b/bioprov/tests/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_bioprov_imports.py b/bioprov/tests/test_bioprov_imports.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_bioprov_integration.py b/bioprov/tests/test_bioprov_integration.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_bioprov_programs.py b/bioprov/tests/test_bioprov_programs.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_bioprov_workflows.py b/bioprov/tests/test_bioprov_workflows.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_src_config.py b/bioprov/tests/test_src_config.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_src_file.py b/bioprov/tests/test_src_file.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_src_main.py b/bioprov/tests/test_src_main.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/tests/test_src_prov.py b/bioprov/tests/test_src_prov.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/utils.py b/bioprov/utils.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 Helper functions.

diff --git a/bioprov/workflows/__init__.py b/bioprov/workflows/__init__.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 from .genome_annotation import genome_annotation

diff --git a/bioprov/workflows/blastn.py b/bioprov/workflows/blastn.py
@@ -3,7 +3,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 BLAST nucleotide alignment workflow

diff --git a/bioprov/workflows/genome_annotation.py b/bioprov/workflows/genome_annotation.py
@@ -3,7 +3,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 """
 Genome annotation workflow module.

diff --git a/bioprov/workflows/kaiju.py b/bioprov/workflows/kaiju.py
@@ -3,7 +3,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/bioprov/workflows/wf_parser.py b/bioprov/workflows/wf_parser.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 """

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -24,7 +24,7 @@
 author = "Vini Salazar"
 
 # The full version, including alpha/beta/rc tags
-release = "0.1.18"
+release = "0.1.18a"
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/setup.py b/setup.py
@@ -2,7 +2,7 @@
 __license__ = "MIT"
 __maintainer__ = "Vini Salazar"
 __url__ = "https://github.com/vinisalazar/bioprov"
-__version__ = "0.1.18"
+__version__ = "0.1.18a"
 
 
 import setuptools
@@ -12,7 +12,7 @@
 
 setuptools.setup(
     name="bioprov",
-    version="0.1.18",
+    version="0.1.18a",
     author="Vini Salazar",
     author_email="viniws@gmail.com",
     description="BioProv - Provenance capture for bioinformatics workflows",