Skip to content

Commit

Permalink
Edit Readme.md introduction
Browse files Browse the repository at this point in the history
  • Loading branch information
vdha committed Mar 30, 2018
1 parent ff34f63 commit f90a78d
Showing 1 changed file with 2 additions and 4 deletions.
6 changes: 2 additions & 4 deletions README.md
Expand Up @@ -3,16 +3,14 @@

*Don Teng*

This first introductory page contains a bunch of essential readings to get the basics first. Useful sources: Wikipedia, Reddit Explain Like I'm 5 (ELI5), Khan Academy (for undergraduate-level academic concepts), Stackoverflow (a Q&A site for programming), Youtube.

## Contents
This repo contains several tutorial files, with varying levels of difficulty. Recommended prerequisites will be listed near the top of that tutorial. However, try as I might to make them so, there's no guarantee that each tutorial is entirely self-contained, but the idea is that you should be able to start anywhere.
This is a collection of _get started_ pages and introductory tutorials for computational methods routinely used within the group, followed by details on access to high-performance computing access within Monash, and links to bioinformatics beginners tutorials. Recommended prerequisites are listed at the top of that page. However, try as I might to make them so, there's no guarantee that each tutorial is entirely self-contained, but the idea is that you should be able to start anywhere.

1. #### Theory and Software
- [`Commonly used file formats`](./content/misc-file-formats.md) - Tutorial on commonly used file formats like `fasta`, `phy`, etc.
- [`Multiple sequence alignment - introduction`](./content/alignment1-introduction.md) - How to do multiple sequence alignment, part 1
- [`Multiple sequence alignment using MAFFT`](./content/alignment2-mafft.md) - How to do multiple sequence alignment (using `mafft`), part 2
- [`Tree computation part 1: theory`](./content/methods-tree-computation1-theory.md) - A not-so-brief introduction to ML trees and BEAST trees.
- [`Tree computation part 1: theory`](./content/methods-tree-computation1-theory.md) - A not-so-brief introduction to ML trees and BEAST trees.
- [`Tree computation part 2: software`](./content/methods-tree-computation2-software.md) - How to use various programs to compute a tree, and their pros and cons
- [`BEAST tutorial links`](./content/software-beast.md) - A link to existing BEAST tutorials.
- [`PAML-TREESUB`](./content/software-paml-treesub.md) - How to install and use `PAML`, and an associated program, `treesub`.
Expand Down

0 comments on commit f90a78d

Please sign in to comment.