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I was running Exomedepth package for cnv detection from germline CNV's, its running fine till RData file creation but it is throwing an error when its running CallCNVs function, the error is:
Now computing the likelihood for the different copy number states
Error in CallCNVs(x = all.exons, transition.probability = 10^-4, chromosome = refcounts.dafr$space, :
Chromosome, start and end vector must have the same lengths.
Can you please explain what this error means? I am not able to debug this error, this will be very helpful.
The text was updated successfully, but these errors were encountered:
Hi Vincent,
Yes I checked, space should be seqnames actually I aws using the
latest exomeDepth version and the attributes/header details that I am using
are of old version, so its throwing an error.Thanks alot for your help.
Thanks for your quick response.
The issue is fixed now.
Thanks & Regards
Shruti Kapil
On Sun, Apr 5, 2020 at 8:14 PM Vincent Plagnol ***@***.***> wrote:
mmmm... Not sure.
Can you please run a head(refcounts.dafr) and tell me what you see?
I wonder if space should now be seqnames or something like this.
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Hi,
I was running Exomedepth package for cnv detection from germline CNV's, its running fine till RData file creation but it is throwing an error when its running CallCNVs function, the error is:
Now computing the likelihood for the different copy number states
Error in CallCNVs(x = all.exons, transition.probability = 10^-4, chromosome = refcounts.dafr$space, :
Chromosome, start and end vector must have the same lengths.
Can you please explain what this error means? I am not able to debug this error, this will be very helpful.
The text was updated successfully, but these errors were encountered: